Strain Fitness in Agrobacterium fabrum C58 around Atu1302

Experiment: Mandelic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mandelic 5 mM
1,290,264	-		Atu1300	0.79	-0.5
1,290,360	+		Atu1300	0.87	-0.2
1,290,479	+				+0.2
1,290,554	+				+0.7
1,290,554	+				-0.3
1,290,562	-				+0.1
1,290,562	-				-0.1
1,290,562	-				+1.9
1,290,920	-		Atu1301	0.59	-0.2
1,290,953	-		Atu1301	0.63	+0.0
1,291,001	-		Atu1301	0.70	+0.6
1,291,001	-		Atu1301	0.70	+0.1
1,291,211	-				+0.4
1,291,288	+		Atu1302	0.18	+0.2
1,291,325	+		Atu1302	0.27	+0.4
1,291,365	+		Atu1302	0.36	+0.9
1,291,497	+		Atu1302	0.66	+1.6
1,291,507	+		Atu1302	0.68	+0.1
1,291,547	-		Atu1302	0.77	+0.1
1,291,618	-				-0.2
1,291,618	-				+0.0
1,291,618	-				+0.6
1,291,632	+				-0.2
1,291,637	+				-0.1
1,291,650	-				-0.3
1,291,656	+				+1.4
1,291,751	+				-0.4
1,292,016	-		Atu1303	0.14	-0.7
1,292,212	-		Atu1303	0.22	+1.0
1,292,276	+		Atu1303	0.25	+0.7
1,292,344	-		Atu1303	0.28	+0.2
1,292,424	-		Atu1303	0.31	+0.3
1,292,424	-		Atu1303	0.31	+0.1
1,292,430	-		Atu1303	0.31	-0.1
1,292,430	-		Atu1303	0.31	-0.4
1,292,473	+		Atu1303	0.33	+0.4
1,292,473	-		Atu1303	0.33	-0.1
1,292,491	-		Atu1303	0.34	+0.0
1,292,503	+		Atu1303	0.34	+1.0
1,292,503	+		Atu1303	0.34	-0.2
1,292,511	-		Atu1303	0.35	+0.2
1,292,624	-		Atu1303	0.40	+0.1