Strain Fitness in Agrobacterium fabrum C58 around Atu1154

Experiment: Mandelic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mandelic 5 mM
1,146,527	+				+0.7
1,146,531	-				-0.3
1,146,548	+				+0.0
1,146,548	+				-1.4
1,146,548	+				+0.1
1,146,556	-				+0.4
1,146,556	-				+0.5
1,146,556	-				+0.0
1,146,556	-				-0.2
1,146,684	+		Atu1154	0.35	+0.5
1,146,696	+		Atu1154	0.38	+0.7
1,146,787	-		Atu1154	0.57	-0.1
1,146,803	+		Atu1154	0.60	+0.4
1,146,880	+		Atu1154	0.77	+0.3
1,147,004	-				-0.1
1,147,050	-				-0.4
1,147,061	-				+0.0
1,147,136	+				-0.0
1,147,435	+				-0.3
1,147,494	+		Atu1155	0.14	+0.1
1,147,494	+		Atu1155	0.14	+0.1
1,147,494	+		Atu1155	0.14	-0.9
1,147,546	-		Atu1155	0.17	+0.7
1,147,553	+		Atu1155	0.18	+0.2
1,147,559	-		Atu1155	0.18	+0.3
1,147,615	+		Atu1155	0.22	-1.5
1,147,615	+		Atu1155	0.22	+0.2
1,147,615	+		Atu1155	0.22	-0.3
1,147,623	-		Atu1155	0.23	-0.4
1,147,623	-		Atu1155	0.23	+0.4
1,147,623	-		Atu1155	0.23	-0.3
1,147,658	+		Atu1155	0.26	-1.7
1,147,681	-		Atu1155	0.27	-0.4
1,147,739	+		Atu1155	0.31	+0.3
1,147,762	+		Atu1155	0.33	-0.3
1,147,767	+		Atu1155	0.33	+0.4
1,147,785	+		Atu1155	0.35	-0.3
1,147,826	+		Atu1155	0.38	-1.3
1,147,907	-		Atu1155	0.44	+0.2
1,147,932	-		Atu1155	0.45	-0.3
1,147,955	+		Atu1155	0.47	-0.3