Experiment: Mandelic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0821 and Atu0822 overlap by 8 nucleotides Atu0822 and Atu0823 are separated by 11 nucleotides Atu0823 and Atu0824 are separated by 319 nucleotides Atu0824 and Atu0825 are separated by 108 nucleotides
Atu0821: Atu0821 - ABC transporter, membrane spanning protein, at 819,388 to 820,245
Atu0821
Atu0822: Atu0822 - ABC transporter, membrane spanning protein, at 820,238 to 821,110
Atu0822
Atu0823: Atu0823 - ABC transporter, nucleotide binding/ATPase protein, at 821,122 to 822,162
Atu0823
Atu0824: Atu0824 - hypothetical protein, at 822,482 to 822,823
Atu0824
Atu0825: Atu0825 - quinone oxidoreductase, at 822,932 to 823,915
Atu0825
Position (kb) 821
822
823 Strain fitness (log2 ratio) -1
0
1 at 820.221 kb on - strand at 820.297 kb on - strand at 820.436 kb on - strand, within Atu0822 at 820.550 kb on + strand, within Atu0822 at 820.553 kb on + strand, within Atu0822 at 820.627 kb on - strand, within Atu0822 at 820.650 kb on - strand, within Atu0822 at 820.650 kb on - strand, within Atu0822 at 820.654 kb on + strand, within Atu0822 at 820.750 kb on - strand, within Atu0822 at 820.766 kb on - strand, within Atu0822 at 820.830 kb on + strand, within Atu0822 at 820.835 kb on - strand, within Atu0822 at 820.861 kb on + strand, within Atu0822 at 820.861 kb on + strand, within Atu0822 at 820.871 kb on + strand, within Atu0822 at 820.879 kb on - strand, within Atu0822 at 820.928 kb on + strand, within Atu0822 at 821.011 kb on - strand, within Atu0822 at 821.175 kb on + strand at 821.220 kb on + strand at 821.340 kb on - strand, within Atu0823 at 821.340 kb on - strand, within Atu0823 at 821.414 kb on + strand, within Atu0823 at 821.414 kb on + strand, within Atu0823 at 821.479 kb on - strand, within Atu0823 at 821.512 kb on - strand, within Atu0823 at 821.514 kb on + strand, within Atu0823 at 821.616 kb on - strand, within Atu0823 at 821.649 kb on - strand, within Atu0823 at 821.680 kb on + strand, within Atu0823 at 821.710 kb on - strand, within Atu0823 at 821.808 kb on - strand, within Atu0823 at 821.870 kb on + strand, within Atu0823 at 821.875 kb on + strand, within Atu0823 at 821.878 kb on - strand, within Atu0823 at 821.878 kb on - strand, within Atu0823 at 821.888 kb on - strand, within Atu0823 at 821.923 kb on - strand, within Atu0823 at 821.991 kb on + strand, within Atu0823 at 822.053 kb on + strand, within Atu0823 at 822.087 kb on + strand at 822.100 kb on - strand at 822.110 kb on + strand at 822.164 kb on - strand at 822.202 kb on + strand at 822.236 kb on - strand at 822.251 kb on - strand at 822.287 kb on - strand at 822.311 kb on - strand at 822.351 kb on + strand at 822.417 kb on + strand at 822.579 kb on - strand, within Atu0824 at 822.794 kb on - strand at 822.938 kb on - strand at 823.059 kb on + strand, within Atu0825 at 823.059 kb on + strand, within Atu0825 at 823.067 kb on - strand, within Atu0825 at 823.110 kb on + strand, within Atu0825
Per-strain Table
Position Strand Gene LocusTag Fraction Mandelic 5 mM remove 820,221 - +0.8 820,297 - +0.1 820,436 - Atu0822 0.23 -0.1 820,550 + Atu0822 0.36 +0.4 820,553 + Atu0822 0.36 +0.1 820,627 - Atu0822 0.45 +0.1 820,650 - Atu0822 0.47 -0.1 820,650 - Atu0822 0.47 -0.1 820,654 + Atu0822 0.48 -0.1 820,750 - Atu0822 0.59 +0.5 820,766 - Atu0822 0.60 +0.3 820,830 + Atu0822 0.68 +0.8 820,835 - Atu0822 0.68 +0.1 820,861 + Atu0822 0.71 +0.4 820,861 + Atu0822 0.71 -0.1 820,871 + Atu0822 0.73 -0.0 820,879 - Atu0822 0.73 +0.0 820,928 + Atu0822 0.79 +0.5 821,011 - Atu0822 0.89 +0.4 821,175 + +0.2 821,220 + +0.2 821,340 - Atu0823 0.21 +1.1 821,340 - Atu0823 0.21 +0.2 821,414 + Atu0823 0.28 +0.3 821,414 + Atu0823 0.28 +0.3 821,479 - Atu0823 0.34 +0.1 821,512 - Atu0823 0.37 -0.2 821,514 + Atu0823 0.38 +0.2 821,616 - Atu0823 0.47 -0.4 821,649 - Atu0823 0.51 +0.8 821,680 + Atu0823 0.54 +0.8 821,710 - Atu0823 0.56 +0.4 821,808 - Atu0823 0.66 +0.3 821,870 + Atu0823 0.72 +0.1 821,875 + Atu0823 0.72 +0.3 821,878 - Atu0823 0.73 +1.0 821,878 - Atu0823 0.73 +0.5 821,888 - Atu0823 0.74 +0.9 821,923 - Atu0823 0.77 -0.1 821,991 + Atu0823 0.83 +0.2 822,053 + Atu0823 0.89 +0.3 822,087 + +0.1 822,100 - +0.1 822,110 + -0.2 822,164 - +0.5 822,202 + +0.0 822,236 - +0.6 822,251 - +0.8 822,287 - +0.3 822,311 - -0.1 822,351 + -0.4 822,417 + +0.1 822,579 - Atu0824 0.28 -0.2 822,794 - -0.1 822,938 - -0.1 823,059 + Atu0825 0.13 -0.1 823,059 + Atu0825 0.13 -0.1 823,067 - Atu0825 0.14 +0.2 823,110 + Atu0825 0.18 -0.2
Or see this region's nucleotide sequence