Experiment: Mandelic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0820 and Atu0821 are separated by 196 nucleotides Atu0821 and Atu0822 overlap by 8 nucleotides Atu0822 and Atu0823 are separated by 11 nucleotides
Atu0820: Atu0820 - ABC transporter, substrate binding protein (sulfate), at 818,166 to 819,191
Atu0820
Atu0821: Atu0821 - ABC transporter, membrane spanning protein, at 819,388 to 820,245
Atu0821
Atu0822: Atu0822 - ABC transporter, membrane spanning protein, at 820,238 to 821,110
Atu0822
Atu0823: Atu0823 - ABC transporter, nucleotide binding/ATPase protein, at 821,122 to 822,162
Atu0823
Position (kb) 819
820
821 Strain fitness (log2 ratio) -1
0
1
2 at 818.407 kb on + strand, within Atu0820 at 818.486 kb on + strand, within Atu0820 at 818.560 kb on + strand, within Atu0820 at 818.569 kb on - strand, within Atu0820 at 818.569 kb on - strand, within Atu0820 at 818.569 kb on - strand, within Atu0820 at 818.625 kb on - strand, within Atu0820 at 818.658 kb on - strand, within Atu0820 at 818.664 kb on + strand, within Atu0820 at 818.668 kb on + strand, within Atu0820 at 818.687 kb on + strand, within Atu0820 at 818.687 kb on + strand, within Atu0820 at 818.687 kb on + strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.708 kb on + strand, within Atu0820 at 818.714 kb on + strand, within Atu0820 at 818.716 kb on - strand, within Atu0820 at 818.716 kb on - strand, within Atu0820 at 818.740 kb on - strand, within Atu0820 at 818.782 kb on + strand, within Atu0820 at 818.792 kb on + strand, within Atu0820 at 818.792 kb on + strand, within Atu0820 at 818.800 kb on - strand, within Atu0820 at 818.930 kb on - strand, within Atu0820 at 818.979 kb on - strand, within Atu0820 at 818.997 kb on + strand, within Atu0820 at 818.997 kb on + strand, within Atu0820 at 819.020 kb on + strand, within Atu0820 at 819.022 kb on + strand, within Atu0820 at 819.037 kb on + strand, within Atu0820 at 819.122 kb on + strand at 819.130 kb on - strand at 819.459 kb on - strand at 819.502 kb on - strand, within Atu0821 at 819.534 kb on + strand, within Atu0821 at 819.578 kb on + strand, within Atu0821 at 819.737 kb on - strand, within Atu0821 at 819.746 kb on + strand, within Atu0821 at 819.746 kb on + strand, within Atu0821 at 819.746 kb on + strand, within Atu0821 at 819.746 kb on + strand, within Atu0821 at 819.754 kb on - strand, within Atu0821 at 819.763 kb on + strand, within Atu0821 at 819.770 kb on - strand, within Atu0821 at 819.821 kb on + strand, within Atu0821 at 819.829 kb on - strand, within Atu0821 at 819.918 kb on + strand, within Atu0821 at 819.968 kb on + strand, within Atu0821 at 819.984 kb on - strand, within Atu0821 at 819.994 kb on + strand, within Atu0821 at 820.054 kb on + strand, within Atu0821 at 820.062 kb on - strand, within Atu0821 at 820.101 kb on + strand, within Atu0821 at 820.221 kb on - strand at 820.297 kb on - strand at 820.436 kb on - strand, within Atu0822 at 820.550 kb on + strand, within Atu0822 at 820.553 kb on + strand, within Atu0822 at 820.627 kb on - strand, within Atu0822 at 820.650 kb on - strand, within Atu0822 at 820.650 kb on - strand, within Atu0822 at 820.654 kb on + strand, within Atu0822 at 820.750 kb on - strand, within Atu0822 at 820.766 kb on - strand, within Atu0822 at 820.830 kb on + strand, within Atu0822 at 820.835 kb on - strand, within Atu0822 at 820.861 kb on + strand, within Atu0822 at 820.861 kb on + strand, within Atu0822 at 820.871 kb on + strand, within Atu0822 at 820.879 kb on - strand, within Atu0822 at 820.928 kb on + strand, within Atu0822 at 821.011 kb on - strand, within Atu0822 at 821.175 kb on + strand at 821.220 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mandelic 5 mM remove 818,407 + Atu0820 0.23 +0.6 818,486 + Atu0820 0.31 -0.5 818,560 + Atu0820 0.38 +0.3 818,569 - Atu0820 0.39 +0.1 818,569 - Atu0820 0.39 -0.7 818,569 - Atu0820 0.39 +0.1 818,625 - Atu0820 0.45 +0.4 818,658 - Atu0820 0.48 +0.6 818,664 + Atu0820 0.49 +0.3 818,668 + Atu0820 0.49 +0.1 818,687 + Atu0820 0.51 +0.1 818,687 + Atu0820 0.51 -1.0 818,687 + Atu0820 0.51 -0.3 818,695 - Atu0820 0.52 +0.3 818,695 - Atu0820 0.52 +0.2 818,695 - Atu0820 0.52 +0.3 818,695 - Atu0820 0.52 +0.1 818,708 + Atu0820 0.53 +0.8 818,714 + Atu0820 0.53 +0.3 818,716 - Atu0820 0.54 +0.2 818,716 - Atu0820 0.54 -1.2 818,740 - Atu0820 0.56 +0.2 818,782 + Atu0820 0.60 -0.0 818,792 + Atu0820 0.61 +0.0 818,792 + Atu0820 0.61 +0.0 818,800 - Atu0820 0.62 +0.6 818,930 - Atu0820 0.74 +0.3 818,979 - Atu0820 0.79 +0.0 818,997 + Atu0820 0.81 +0.8 818,997 + Atu0820 0.81 +0.7 819,020 + Atu0820 0.83 +0.4 819,022 + Atu0820 0.83 +0.2 819,037 + Atu0820 0.85 +0.3 819,122 + -0.4 819,130 - +0.3 819,459 - +1.1 819,502 - Atu0821 0.13 +0.6 819,534 + Atu0821 0.17 +1.8 819,578 + Atu0821 0.22 +0.0 819,737 - Atu0821 0.41 +0.6 819,746 + Atu0821 0.42 -0.1 819,746 + Atu0821 0.42 -0.3 819,746 + Atu0821 0.42 +0.0 819,746 + Atu0821 0.42 -0.0 819,754 - Atu0821 0.43 -0.1 819,763 + Atu0821 0.44 -0.2 819,770 - Atu0821 0.45 +0.5 819,821 + Atu0821 0.50 +0.3 819,829 - Atu0821 0.51 +0.1 819,918 + Atu0821 0.62 -0.2 819,968 + Atu0821 0.68 +1.5 819,984 - Atu0821 0.69 +0.8 819,994 + Atu0821 0.71 +0.3 820,054 + Atu0821 0.78 -0.1 820,062 - Atu0821 0.79 +0.3 820,101 + Atu0821 0.83 +0.5 820,221 - +0.8 820,297 - +0.1 820,436 - Atu0822 0.23 -0.1 820,550 + Atu0822 0.36 +0.4 820,553 + Atu0822 0.36 +0.1 820,627 - Atu0822 0.45 +0.1 820,650 - Atu0822 0.47 -0.1 820,650 - Atu0822 0.47 -0.1 820,654 + Atu0822 0.48 -0.1 820,750 - Atu0822 0.59 +0.5 820,766 - Atu0822 0.60 +0.3 820,830 + Atu0822 0.68 +0.8 820,835 - Atu0822 0.68 +0.1 820,861 + Atu0822 0.71 +0.4 820,861 + Atu0822 0.71 -0.1 820,871 + Atu0822 0.73 -0.0 820,879 - Atu0822 0.73 +0.0 820,928 + Atu0822 0.79 +0.5 821,011 - Atu0822 0.89 +0.4 821,175 + +0.2 821,220 + +0.2
Or see this region's nucleotide sequence