Experiment: Mandelic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0577 and Atu0578 overlap by 4 nucleotides Atu0578 and Atu0579 overlap by 10 nucleotides Atu0579 and Atu0580 are separated by 45 nucleotides Atu0580 and Atu0581 are separated by 157 nucleotides
Atu0577: Atu0577 - FLAF protein, at 562,858 to 563,202
Atu0577
Atu0578: Atu0578 - FlbT post-transcriptional regulator of flagellin, at 563,199 to 563,648
Atu0578
Atu0579: Atu0579 - hook formation protein, at 563,639 to 564,112
Atu0579
Atu0580: Atu0580 - flagellar biosynthetic protein, at 564,158 to 564,424
Atu0580
Atu0581: Atu0581 - flagellar biosynthesis protein, at 564,582 to 566,669
Atu0581
Position (kb) 564
565 Strain fitness (log2 ratio) -1
0
1 at 563.214 kb on - strand at 563.333 kb on + strand, within Atu0578 at 563.415 kb on + strand, within Atu0578 at 563.537 kb on + strand, within Atu0578 at 563.558 kb on + strand, within Atu0578 at 563.558 kb on + strand, within Atu0578 at 563.674 kb on + strand at 563.674 kb on + strand at 563.674 kb on + strand at 563.677 kb on - strand at 563.704 kb on + strand, within Atu0579 at 563.728 kb on + strand, within Atu0579 at 563.728 kb on - strand, within Atu0579 at 563.774 kb on + strand, within Atu0579 at 563.778 kb on + strand, within Atu0579 at 563.863 kb on + strand, within Atu0579 at 563.874 kb on + strand, within Atu0579 at 563.881 kb on + strand, within Atu0579 at 563.888 kb on + strand, within Atu0579 at 564.113 kb on - strand at 564.160 kb on + strand at 564.173 kb on - strand at 564.204 kb on - strand, within Atu0580 at 564.252 kb on - strand, within Atu0580 at 564.264 kb on + strand, within Atu0580 at 564.479 kb on - strand at 564.523 kb on + strand at 564.523 kb on + strand at 564.614 kb on + strand at 564.617 kb on - strand at 564.697 kb on + strand at 564.701 kb on + strand at 564.745 kb on + strand at 564.774 kb on + strand at 564.839 kb on - strand, within Atu0581 at 565.003 kb on - strand, within Atu0581 at 565.034 kb on + strand, within Atu0581 at 565.047 kb on - strand, within Atu0581 at 565.047 kb on - strand, within Atu0581 at 565.312 kb on - strand, within Atu0581 at 565.336 kb on + strand, within Atu0581
Per-strain Table
Position Strand Gene LocusTag Fraction Mandelic 5 mM remove 563,214 - -0.0 563,333 + Atu0578 0.30 +0.5 563,415 + Atu0578 0.48 -0.2 563,537 + Atu0578 0.75 +0.3 563,558 + Atu0578 0.80 +0.1 563,558 + Atu0578 0.80 +0.1 563,674 + +0.3 563,674 + -0.2 563,674 + +1.5 563,677 - -0.0 563,704 + Atu0579 0.14 -0.2 563,728 + Atu0579 0.19 -0.1 563,728 - Atu0579 0.19 +0.5 563,774 + Atu0579 0.28 +0.4 563,778 + Atu0579 0.29 -0.0 563,863 + Atu0579 0.47 -0.1 563,874 + Atu0579 0.50 -0.1 563,881 + Atu0579 0.51 -0.0 563,888 + Atu0579 0.53 -1.3 564,113 - -0.4 564,160 + +0.5 564,173 - +1.0 564,204 - Atu0580 0.17 -0.0 564,252 - Atu0580 0.35 -0.4 564,264 + Atu0580 0.40 -0.5 564,479 - +0.2 564,523 + -0.4 564,523 + -0.3 564,614 + -0.1 564,617 - -0.5 564,697 + -0.0 564,701 + +0.8 564,745 + -0.0 564,774 + -0.4 564,839 - Atu0581 0.12 -0.3 565,003 - Atu0581 0.20 +0.6 565,034 + Atu0581 0.22 +0.1 565,047 - Atu0581 0.22 -0.2 565,047 - Atu0581 0.22 +0.1 565,312 - Atu0581 0.35 +0.2 565,336 + Atu0581 0.36 -0.5
Or see this region's nucleotide sequence