Experiment: Mandelic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0484 and Atu0485 are separated by 252 nucleotides Atu0485 and Atu0486 overlap by 1 nucleotides Atu0486 and Atu8129 are separated by 36 nucleotides Atu8129 and Atu0488 are separated by 1 nucleotides
Atu0484: Atu0484 - two component response regulator, at 473,010 to 473,660
Atu0484
Atu0485: Atu0485 - hypothetical protein, at 473,913 to 474,266
Atu0485
Atu0486: Atu0486 - dihydroorotate dehydrogenase, at 474,266 to 475,357
Atu0486
Atu8129: Atu8129 - hypothetical protein, at 475,394 to 475,891
Atu8129
Atu0488: Atu0488 - hypothetical protein, at 475,893 to 476,159
Atu0488
Position (kb) 474
475
476 Strain fitness (log2 ratio) -1
0
1 at 473.292 kb on + strand, within Atu0484 at 473.292 kb on + strand, within Atu0484 at 473.313 kb on + strand, within Atu0484 at 473.379 kb on + strand, within Atu0484 at 473.399 kb on - strand, within Atu0484 at 473.568 kb on + strand, within Atu0484 at 473.598 kb on - strand at 473.783 kb on + strand at 473.898 kb on + strand at 473.898 kb on + strand at 473.906 kb on - strand at 473.969 kb on + strand, within Atu0485 at 473.977 kb on - strand, within Atu0485 at 474.181 kb on + strand, within Atu0485 at 474.203 kb on + strand, within Atu0485 at 474.300 kb on + strand at 474.482 kb on - strand, within Atu0486 at 474.574 kb on + strand, within Atu0486 at 474.632 kb on + strand, within Atu0486 at 474.725 kb on + strand, within Atu0486 at 474.846 kb on - strand, within Atu0486 at 474.904 kb on + strand, within Atu0486 at 474.904 kb on + strand, within Atu0486 at 474.944 kb on - strand, within Atu0486 at 475.302 kb on + strand at 475.310 kb on - strand at 475.372 kb on + strand at 475.509 kb on - strand, within Atu8129 at 475.517 kb on + strand, within Atu8129 at 475.531 kb on + strand, within Atu8129 at 475.539 kb on - strand, within Atu8129 at 475.539 kb on - strand, within Atu8129 at 475.544 kb on - strand, within Atu8129 at 475.559 kb on + strand, within Atu8129 at 475.589 kb on - strand, within Atu8129 at 475.640 kb on + strand, within Atu8129 at 475.667 kb on - strand, within Atu8129 at 475.711 kb on + strand, within Atu8129 at 475.720 kb on + strand, within Atu8129 at 475.738 kb on - strand, within Atu8129 at 475.738 kb on - strand, within Atu8129 at 475.764 kb on - strand, within Atu8129 at 475.776 kb on - strand, within Atu8129 at 475.776 kb on - strand, within Atu8129 at 475.791 kb on + strand, within Atu8129 at 475.793 kb on - strand, within Atu8129 at 475.799 kb on - strand, within Atu8129 at 475.876 kb on - strand at 475.956 kb on + strand, within Atu0488 at 476.121 kb on - strand, within Atu0488 at 476.125 kb on + strand, within Atu0488 at 476.131 kb on - strand, within Atu0488 at 476.191 kb on - strand at 476.191 kb on - strand at 476.193 kb on - strand at 476.223 kb on + strand at 476.225 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mandelic 5 mM remove 473,292 + Atu0484 0.43 -0.2 473,292 + Atu0484 0.43 -1.2 473,313 + Atu0484 0.47 -0.3 473,379 + Atu0484 0.57 -0.5 473,399 - Atu0484 0.60 +0.1 473,568 + Atu0484 0.86 -0.0 473,598 - +0.6 473,783 + +0.4 473,898 + -0.3 473,898 + +0.0 473,906 - -0.7 473,969 + Atu0485 0.16 +0.4 473,977 - Atu0485 0.18 -0.7 474,181 + Atu0485 0.76 +0.0 474,203 + Atu0485 0.82 -0.3 474,300 + -0.9 474,482 - Atu0486 0.20 -0.9 474,574 + Atu0486 0.28 -0.3 474,632 + Atu0486 0.34 -0.4 474,725 + Atu0486 0.42 -0.4 474,846 - Atu0486 0.53 -1.0 474,904 + Atu0486 0.58 -1.1 474,904 + Atu0486 0.58 +0.1 474,944 - Atu0486 0.62 +0.2 475,302 + -0.6 475,310 - -0.6 475,372 + -1.1 475,509 - Atu8129 0.23 -0.3 475,517 + Atu8129 0.25 +0.0 475,531 + Atu8129 0.28 -0.5 475,539 - Atu8129 0.29 -0.1 475,539 - Atu8129 0.29 +0.4 475,544 - Atu8129 0.30 -1.4 475,559 + Atu8129 0.33 +0.4 475,589 - Atu8129 0.39 -0.7 475,640 + Atu8129 0.49 -0.2 475,667 - Atu8129 0.55 -1.4 475,711 + Atu8129 0.64 +0.8 475,720 + Atu8129 0.65 +0.4 475,738 - Atu8129 0.69 +0.6 475,738 - Atu8129 0.69 +0.8 475,764 - Atu8129 0.74 -0.7 475,776 - Atu8129 0.77 +1.0 475,776 - Atu8129 0.77 -0.1 475,791 + Atu8129 0.80 -0.0 475,793 - Atu8129 0.80 -0.2 475,799 - Atu8129 0.81 -0.1 475,876 - +1.3 475,956 + Atu0488 0.24 -0.6 476,121 - Atu0488 0.85 +0.0 476,125 + Atu0488 0.87 -0.1 476,131 - Atu0488 0.89 -0.0 476,191 - +0.2 476,191 - +0.2 476,193 - -1.2 476,223 + -0.0 476,225 + -1.0
Or see this region's nucleotide sequence