Strain Fitness in Pseudomonas putida KT2440 around PP_5472

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
1,739,931	+		PP_1535	0.23	+1.0
1,739,931	+		PP_1535	0.23	+1.6
1,739,931	+		PP_1535	0.23	+0.4
1,739,932	-		PP_1535	0.23	+0.7
1,739,932	-		PP_1535	0.23	+0.5
1,739,932	-		PP_1535	0.23	-3.0
1,740,046	+		PP_1535	0.48	-1.0
1,740,447	+		PP_1536	0.38	+0.7
1,740,476	+		PP_1536	0.45	+1.1
1,740,517	-		PP_1536	0.56	-0.6
1,740,600	-		PP_1536	0.78	-0.7
1,740,665	+				-0.8
1,740,734	+		PP_1537	0.23	-0.6
1,740,734	+		PP_1537	0.23	-1.1
1,740,799	+		PP_1537	0.51	-0.3
1,740,799	+		PP_1537	0.51	+0.6
1,740,799	+		PP_1537	0.51	-1.1
1,740,799	+		PP_1537	0.51	-2.6
1,740,799	+		PP_1537	0.51	-0.0
1,740,800	-		PP_1537	0.52	-2.5
1,740,800	-		PP_1537	0.52	+2.1
1,740,801	+		PP_1537	0.52	-0.6
1,740,802	-		PP_1537	0.53	-0.1
1,740,840	+		PP_1537	0.69	-2.6
1,740,849	+		PP_1537	0.73	+3.4
1,740,873	-		PP_1537	0.84	-1.1
1,740,916	+				+1.7
1,740,916	+				+4.7
1,740,916	+				-0.1
1,740,916	+				-2.5
1,740,916	+				+0.1
1,740,916	+				+3.0
1,740,917	-				+3.1
1,740,917	-				+0.8
1,740,917	-				+0.7
1,740,917	-				+0.1
1,740,957	-		PP_5472	0.20	-2.2
1,740,957	-		PP_5472	0.20	+0.1
1,741,050	+		PP_5472	0.56	-0.7
1,741,050	+		PP_5472	0.56	-4.4
1,741,050	+		PP_5472	0.56	-1.5
1,741,051	-		PP_5472	0.56	+0.8
1,741,051	-		PP_5472	0.56	-1.5
1,741,051	-		PP_5472	0.56	+0.3
1,741,054	+		PP_5472	0.57	-0.7
1,741,054	+		PP_5472	0.57	-0.5
1,741,055	-		PP_5472	0.58	-2.0
1,741,055	-		PP_5472	0.58	-0.6
1,741,063	-		PP_5472	0.61	+0.3
1,741,308	+		PP_1538	0.20	+0.5
1,741,308	+		PP_1538	0.20	-1.0
1,741,309	-		PP_1538	0.20	+0.7
1,741,309	-		PP_1538	0.20	+3.2
1,741,309	-		PP_1538	0.20	+1.2
1,741,309	-		PP_1538	0.20	-3.2
1,741,311	+		PP_1538	0.20	+0.1
1,741,311	+		PP_1538	0.20	-2.6
1,741,312	-		PP_1538	0.20	-2.0
1,741,312	-		PP_1538	0.20	+0.2
1,741,343	+		PP_1538	0.24	-1.1
1,741,540	-		PP_1538	0.50	+0.6
1,741,560	+		PP_1538	0.53	+0.8
1,741,561	-		PP_1538	0.53	-0.0
1,741,624	+		PP_1538	0.62	-1.6
1,741,701	+		PP_1538	0.72	+0.1
1,741,760	+		PP_1538	0.80	+1.1
1,741,760	+		PP_1538	0.80	+3.4
1,741,760	+		PP_1538	0.80	+1.8
1,741,761	-		PP_1538	0.80	-1.1
1,741,761	-		PP_1538	0.80	-1.2
1,741,761	-		PP_1538	0.80	+1.6
1,741,761	-		PP_1538	0.80	-0.5
1,741,761	-		PP_1538	0.80	+0.0
1,741,761	-		PP_1538	0.80	-1.3
1,741,912	+				-0.6
1,741,912	+				+1.1
1,741,912	+				+0.6
1,741,912	+				+2.4
1,741,913	-				+0.9
1,741,913	-				-0.3
1,741,947	+				+0.5
1,741,947	+				+2.4
1,741,947	+				-0.9
1,741,947	+				+1.3
1,741,948	-				-3.4
1,742,050	+				-0.5
1,742,050	+				+1.1
1,742,050	+				-2.9
1,742,051	-				+0.4
1,742,091	+		PP_1539	0.11	+0.0
1,742,092	-		PP_1539	0.11	-1.9
1,742,092	-		PP_1539	0.11	-0.4
1,742,092	-		PP_1539	0.11	-2.6
1,742,092	-		PP_1539	0.11	+0.6