Strain Fitness in Pseudomonas putida KT2440 around PP_5268

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
6,016,480	+		PP_5728	0.76	-1.5
6,016,505	+		PP_5728	0.79	-2.0
6,016,509	+		PP_5728	0.79	+1.3
6,016,509	+		PP_5728	0.79	-0.9
6,016,510	-		PP_5728	0.79	-0.4
6,016,510	-		PP_5728	0.79	+1.0
6,016,510	-		PP_5728	0.79	-0.1
6,016,543	+		PP_5728	0.83	+1.9
6,016,575	+		PP_5728	0.87	-0.8
6,016,576	-		PP_5728	0.87	-0.3
6,016,582	-		PP_5728	0.88	+0.5
6,016,670	-				+0.5
6,016,688	+				+3.3
6,016,739	-				-0.9
6,016,809	+				-0.1
6,016,907	+				+2.1
6,016,997	+		PP_5267	0.20	+2.1
6,017,003	+		PP_5267	0.22	+2.4
6,017,004	-		PP_5267	0.22	+0.3
6,017,081	+		PP_5267	0.40	-0.6
6,017,292	+				+2.4
6,017,354	+				-1.2
6,017,395	-				+0.6
6,017,558	+		PP_5268	0.16	-1.7
6,017,558	+		PP_5268	0.16	-2.2
6,017,558	+		PP_5268	0.16	-1.5
6,017,559	-		PP_5268	0.16	-0.7
6,017,559	-		PP_5268	0.16	-2.2
6,017,559	-		PP_5268	0.16	-1.0
6,017,561	+		PP_5268	0.17	+2.1
6,017,561	+		PP_5268	0.17	-0.5
6,017,562	-		PP_5268	0.17	-0.1
6,017,562	-		PP_5268	0.17	-0.3
6,017,562	-		PP_5268	0.17	-1.6
6,017,562	-		PP_5268	0.17	+0.1
6,017,769	+		PP_5268	0.54	+2.1
6,017,769	+		PP_5268	0.54	-0.9
6,017,770	-		PP_5268	0.55	-1.9
6,017,770	-		PP_5268	0.55	+0.7
6,017,792	+		PP_5268	0.59	+1.7
6,017,889	+		PP_5268	0.76	-1.9
6,017,890	-		PP_5268	0.77	+0.5
6,017,899	+		PP_5268	0.78	-1.1
6,017,899	+		PP_5268	0.78	-0.7
6,017,899	+		PP_5268	0.78	-1.9
6,017,899	+		PP_5268	0.78	-1.9
6,017,900	-		PP_5268	0.78	-4.7
6,017,900	-		PP_5268	0.78	-2.1
6,018,065	-				-3.2
6,018,065	-				+2.7
6,018,086	-				+2.7
6,018,089	+				-0.3
6,018,089	+				+0.1
6,018,089	+				-0.8
6,018,140	-				-3.4