Experiment: pH 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5227 and PP_5228 overlap by 29 nucleotides PP_5228 and PP_5229 are separated by 13 nucleotides PP_5229 and PP_5230 overlap by 1 nucleotides
PP_5227: PP_5227 - diaminopimelate decarboxylase, at 5,961,105 to 5,962,352
_5227
PP_5228: PP_5228 - diaminopimelate epimerase, at 5,962,324 to 5,963,187
_5228
PP_5229: PP_5229 - conserved protein of unknown function, at 5,963,201 to 5,963,911
_5229
PP_5230: PP_5230 - Tyrosine recombinase XerC, at 5,963,911 to 5,964,810
_5230
Position (kb) 5962
5963
5964 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5961.508 kb on + strand, within PP_5227 at 5961.509 kb on - strand, within PP_5227 at 5961.509 kb on - strand, within PP_5227 at 5961.509 kb on - strand, within PP_5227 at 5961.585 kb on + strand, within PP_5227 at 5961.585 kb on + strand, within PP_5227 at 5961.585 kb on + strand, within PP_5227 at 5961.585 kb on + strand, within PP_5227 at 5961.585 kb on + strand, within PP_5227 at 5961.586 kb on - strand, within PP_5227 at 5961.586 kb on - strand, within PP_5227 at 5961.586 kb on - strand, within PP_5227 at 5961.586 kb on - strand, within PP_5227 at 5961.586 kb on - strand, within PP_5227 at 5961.648 kb on + strand, within PP_5227 at 5961.648 kb on + strand, within PP_5227 at 5961.648 kb on + strand, within PP_5227 at 5961.648 kb on + strand, within PP_5227 at 5961.648 kb on + strand, within PP_5227 at 5961.648 kb on + strand, within PP_5227 at 5961.648 kb on + strand, within PP_5227 at 5961.648 kb on + strand, within PP_5227 at 5961.649 kb on - strand, within PP_5227 at 5961.649 kb on - strand, within PP_5227 at 5961.649 kb on - strand at 5961.649 kb on - strand, within PP_5227 at 5961.649 kb on - strand, within PP_5227 at 5961.649 kb on - strand, within PP_5227 at 5961.653 kb on - strand, within PP_5227 at 5961.653 kb on - strand, within PP_5227 at 5961.667 kb on + strand, within PP_5227 at 5961.790 kb on + strand, within PP_5227 at 5961.791 kb on - strand, within PP_5227 at 5961.867 kb on + strand, within PP_5227 at 5962.051 kb on - strand, within PP_5227 at 5962.124 kb on + strand, within PP_5227 at 5962.195 kb on + strand, within PP_5227 at 5962.213 kb on - strand, within PP_5227 at 5962.236 kb on + strand at 5962.294 kb on + strand at 5962.323 kb on + strand at 5962.323 kb on + strand at 5962.324 kb on - strand at 5962.324 kb on - strand at 5962.350 kb on + strand at 5962.351 kb on - strand at 5962.371 kb on + strand at 5962.541 kb on - strand, within PP_5228 at 5962.830 kb on + strand, within PP_5228 at 5963.518 kb on - strand, within PP_5229 at 5963.733 kb on + strand, within PP_5229 at 5963.734 kb on - strand, within PP_5229 at 5963.762 kb on + strand, within PP_5229 at 5963.763 kb on - strand, within PP_5229 at 5963.813 kb on + strand, within PP_5229 at 5963.813 kb on + strand, within PP_5229 at 5963.813 kb on + strand, within PP_5229 at 5963.813 kb on + strand, within PP_5229 at 5963.814 kb on - strand, within PP_5229 at 5963.846 kb on + strand at 5963.847 kb on - strand at 5963.847 kb on - strand at 5963.847 kb on - strand at 5963.847 kb on - strand at 5963.932 kb on + strand at 5963.932 kb on + strand at 5963.933 kb on - strand at 5963.987 kb on - strand at 5964.151 kb on + strand, within PP_5230 at 5964.158 kb on - strand, within PP_5230
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5 remove 5,961,508 + PP_5227 0.32 -0.5 5,961,509 - PP_5227 0.32 +0.1 5,961,509 - PP_5227 0.32 +0.1 5,961,509 - PP_5227 0.32 -1.9 5,961,585 + PP_5227 0.38 -2.2 5,961,585 + PP_5227 0.38 +0.1 5,961,585 + PP_5227 0.38 +0.1 5,961,585 + PP_5227 0.38 +0.1 5,961,585 + PP_5227 0.38 -2.1 5,961,586 - PP_5227 0.39 +0.1 5,961,586 - PP_5227 0.39 -0.9 5,961,586 - PP_5227 0.39 +0.1 5,961,586 - PP_5227 0.39 +0.1 5,961,586 - PP_5227 0.39 +0.1 5,961,648 + PP_5227 0.44 -0.9 5,961,648 + PP_5227 0.44 +0.1 5,961,648 + PP_5227 0.44 +0.1 5,961,648 + PP_5227 0.44 -1.5 5,961,648 + PP_5227 0.44 +0.1 5,961,648 + PP_5227 0.44 +0.1 5,961,648 + PP_5227 0.44 +0.1 5,961,648 + PP_5227 0.44 +0.1 5,961,649 - PP_5227 0.44 +0.1 5,961,649 - PP_5227 0.44 +0.1 5,961,649 - +0.1 5,961,649 - PP_5227 0.44 -2.2 5,961,649 - PP_5227 0.44 +0.1 5,961,649 - PP_5227 0.44 -2.6 5,961,653 - PP_5227 0.44 +0.1 5,961,653 - PP_5227 0.44 +0.1 5,961,667 + PP_5227 0.45 +0.1 5,961,790 + PP_5227 0.55 +0.1 5,961,791 - PP_5227 0.55 +0.1 5,961,867 + PP_5227 0.61 -3.5 5,962,051 - PP_5227 0.76 -0.9 5,962,124 + PP_5227 0.82 -0.9 5,962,195 + PP_5227 0.87 -2.9 5,962,213 - PP_5227 0.89 +0.1 5,962,236 + +0.1 5,962,294 + -2.2 5,962,323 + +0.1 5,962,323 + +0.1 5,962,324 - +0.1 5,962,324 - -0.9 5,962,350 + +2.1 5,962,351 - +0.1 5,962,371 + +1.1 5,962,541 - PP_5228 0.25 +0.1 5,962,830 + PP_5228 0.59 +0.1 5,963,518 - PP_5229 0.45 +3.3 5,963,733 + PP_5229 0.75 -1.2 5,963,734 - PP_5229 0.75 +0.1 5,963,762 + PP_5229 0.79 +0.1 5,963,763 - PP_5229 0.79 +0.1 5,963,813 + PP_5229 0.86 +0.1 5,963,813 + PP_5229 0.86 +0.1 5,963,813 + PP_5229 0.86 +2.9 5,963,813 + PP_5229 0.86 +1.2 5,963,814 - PP_5229 0.86 -0.9 5,963,846 + +0.7 5,963,847 - +0.1 5,963,847 - +0.1 5,963,847 - -2.7 5,963,847 - +0.1 5,963,932 + -1.5 5,963,932 + -4.2 5,963,933 - +0.1 5,963,987 - -4.1 5,964,151 + PP_5230 0.27 +1.1 5,964,158 - PP_5230 0.27 -1.9
Or see this region's nucleotide sequence