Experiment: pH 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5203 and PP_5204 are separated by 19 nucleotides PP_5204 and PP_5205 are separated by 34 nucleotides PP_5205 and PP_5206 are separated by 95 nucleotides PP_5206 and PP_5207 overlap by 4 nucleotides
PP_5203: PP_5203 - 5-formyltetrahydrofolate cyclo-ligase, at 5,934,980 to 5,935,588
_5203
PP_5204: PP_5204 - conserved protein of unknown function, at 5,935,608 to 5,935,904
_5204
PP_5205: PP_5205 - conserved protein of unknown function, at 5,935,939 to 5,936,388
_5205
PP_5206: PP_5206 - putative translation-related protein, at 5,936,484 to 5,937,443
_5206
PP_5207: PP_5207 - ribosome-associated ATPase, at 5,937,440 to 5,940,160
_5207
Position (kb) 5936
5937
5938 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5935.572 kb on - strand at 5935.607 kb on - strand at 5935.645 kb on + strand, within PP_5204 at 5935.646 kb on - strand, within PP_5204 at 5935.646 kb on - strand, within PP_5204 at 5935.691 kb on + strand, within PP_5204 at 5935.749 kb on - strand, within PP_5204 at 5935.791 kb on + strand, within PP_5204 at 5935.791 kb on + strand, within PP_5204 at 5935.831 kb on - strand, within PP_5204 at 5935.910 kb on + strand at 5935.911 kb on - strand at 5936.032 kb on + strand, within PP_5205 at 5936.032 kb on + strand, within PP_5205 at 5936.032 kb on + strand, within PP_5205 at 5936.032 kb on + strand, within PP_5205 at 5936.033 kb on - strand, within PP_5205 at 5936.033 kb on - strand, within PP_5205 at 5936.033 kb on - strand, within PP_5205 at 5936.033 kb on - strand, within PP_5205 at 5936.086 kb on + strand, within PP_5205 at 5936.087 kb on - strand, within PP_5205 at 5936.183 kb on - strand, within PP_5205 at 5936.243 kb on + strand, within PP_5205 at 5936.243 kb on + strand, within PP_5205 at 5936.243 kb on + strand, within PP_5205 at 5936.243 kb on + strand, within PP_5205 at 5936.244 kb on - strand, within PP_5205 at 5936.244 kb on - strand, within PP_5205 at 5936.391 kb on - strand at 5936.398 kb on + strand at 5936.399 kb on - strand at 5936.501 kb on + strand at 5936.557 kb on - strand at 5936.707 kb on + strand, within PP_5206 at 5936.787 kb on + strand, within PP_5206 at 5936.944 kb on + strand, within PP_5206 at 5936.945 kb on - strand, within PP_5206 at 5937.147 kb on + strand, within PP_5206 at 5937.148 kb on - strand, within PP_5206 at 5937.148 kb on - strand, within PP_5206 at 5937.148 kb on - strand, within PP_5206 at 5937.148 kb on - strand, within PP_5206 at 5937.148 kb on - strand, within PP_5206 at 5937.160 kb on - strand, within PP_5206 at 5937.193 kb on + strand, within PP_5206 at 5937.193 kb on + strand, within PP_5206 at 5937.193 kb on + strand, within PP_5206 at 5937.399 kb on + strand at 5937.400 kb on - strand at 5937.403 kb on + strand at 5937.403 kb on + strand at 5937.403 kb on + strand at 5937.403 kb on + strand at 5937.403 kb on + strand at 5937.403 kb on + strand at 5937.404 kb on - strand at 5937.404 kb on - strand at 5937.404 kb on - strand at 5937.496 kb on - strand at 5937.511 kb on - strand at 5937.610 kb on - strand at 5937.925 kb on + strand, within PP_5207 at 5938.040 kb on + strand, within PP_5207 at 5938.041 kb on - strand, within PP_5207 at 5938.162 kb on + strand, within PP_5207 at 5938.169 kb on + strand, within PP_5207 at 5938.169 kb on + strand, within PP_5207
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5 remove 5,935,572 - -1.3 5,935,607 - +0.5 5,935,645 + PP_5204 0.12 -0.9 5,935,646 - PP_5204 0.13 +1.5 5,935,646 - PP_5204 0.13 -4.7 5,935,691 + PP_5204 0.28 -0.1 5,935,749 - PP_5204 0.47 +0.1 5,935,791 + PP_5204 0.62 -0.1 5,935,791 + PP_5204 0.62 -1.5 5,935,831 - PP_5204 0.75 -0.1 5,935,910 + -3.9 5,935,911 - -1.1 5,936,032 + PP_5205 0.21 -0.2 5,936,032 + PP_5205 0.21 -1.1 5,936,032 + PP_5205 0.21 -0.3 5,936,032 + PP_5205 0.21 -2.0 5,936,033 - PP_5205 0.21 +0.1 5,936,033 - PP_5205 0.21 -0.9 5,936,033 - PP_5205 0.21 -0.2 5,936,033 - PP_5205 0.21 -1.0 5,936,086 + PP_5205 0.33 -0.4 5,936,087 - PP_5205 0.33 +0.1 5,936,183 - PP_5205 0.54 +0.5 5,936,243 + PP_5205 0.68 -1.5 5,936,243 + PP_5205 0.68 +3.9 5,936,243 + PP_5205 0.68 +3.1 5,936,243 + PP_5205 0.68 -2.0 5,936,244 - PP_5205 0.68 +1.1 5,936,244 - PP_5205 0.68 -0.4 5,936,391 - +0.2 5,936,398 + +3.3 5,936,399 - -0.2 5,936,501 + +1.2 5,936,557 - -0.5 5,936,707 + PP_5206 0.23 -0.3 5,936,787 + PP_5206 0.32 -2.2 5,936,944 + PP_5206 0.48 -1.4 5,936,945 - PP_5206 0.48 -2.7 5,937,147 + PP_5206 0.69 -3.1 5,937,148 - PP_5206 0.69 -1.1 5,937,148 - PP_5206 0.69 -0.9 5,937,148 - PP_5206 0.69 -1.1 5,937,148 - PP_5206 0.69 +0.9 5,937,148 - PP_5206 0.69 -2.2 5,937,160 - PP_5206 0.70 +0.1 5,937,193 + PP_5206 0.74 -1.8 5,937,193 + PP_5206 0.74 -1.7 5,937,193 + PP_5206 0.74 -0.4 5,937,399 + +1.4 5,937,400 - -1.6 5,937,403 + +1.8 5,937,403 + +3.6 5,937,403 + -0.6 5,937,403 + +0.9 5,937,403 + -0.9 5,937,403 + -3.9 5,937,404 - -0.3 5,937,404 - +0.0 5,937,404 - +0.3 5,937,496 - -3.9 5,937,511 - +0.1 5,937,610 - +1.6 5,937,925 + PP_5207 0.18 -1.2 5,938,040 + PP_5207 0.22 -1.3 5,938,041 - PP_5207 0.22 +0.8 5,938,162 + PP_5207 0.27 -0.6 5,938,169 + PP_5207 0.27 +0.1 5,938,169 + PP_5207 0.27 +0.1
Or see this region's nucleotide sequence