Experiment: pH 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5199 and PP_5200 overlap by 4 nucleotides PP_5200 and PP_5201 are separated by 21 nucleotides PP_5201 and PP_5721 are separated by 145 nucleotides PP_5721 and PP_5202 overlap by 4 nucleotides
PP_5199: PP_5199 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 5,930,870 to 5,932,069
_5199
PP_5200: PP_5200 - proline aminopeptidase P II, at 5,932,066 to 5,933,400
_5200
PP_5201: PP_5201 - conserved protein of unknown function, UPF0149 family, at 5,933,422 to 5,933,976
_5201
PP_5721: PP_5721 - conserved protein of unknown function, at 5,934,122 to 5,934,340
_5721
PP_5202: PP_5202 - putative cell division protein, at 5,934,337 to 5,934,657
_5202
Position (kb) 5932
5933
5934 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5932.239 kb on - strand, within PP_5200 at 5932.239 kb on - strand, within PP_5200 at 5932.239 kb on - strand, within PP_5200 at 5932.239 kb on - strand, within PP_5200 at 5932.304 kb on + strand, within PP_5200 at 5932.305 kb on - strand, within PP_5200 at 5932.490 kb on - strand, within PP_5200 at 5932.532 kb on + strand, within PP_5200 at 5932.533 kb on - strand, within PP_5200 at 5932.599 kb on - strand, within PP_5200 at 5932.671 kb on - strand, within PP_5200 at 5932.671 kb on - strand, within PP_5200 at 5932.716 kb on - strand, within PP_5200 at 5932.716 kb on - strand, within PP_5200 at 5932.752 kb on - strand, within PP_5200 at 5932.776 kb on - strand, within PP_5200 at 5932.776 kb on - strand, within PP_5200 at 5932.878 kb on - strand, within PP_5200 at 5932.888 kb on - strand, within PP_5200 at 5933.019 kb on - strand, within PP_5200 at 5933.019 kb on - strand, within PP_5200 at 5933.180 kb on + strand, within PP_5200 at 5933.181 kb on - strand, within PP_5200 at 5933.375 kb on + strand at 5933.376 kb on - strand at 5933.409 kb on + strand at 5933.409 kb on + strand at 5933.410 kb on - strand at 5933.410 kb on - strand at 5933.502 kb on - strand, within PP_5201 at 5933.502 kb on - strand, within PP_5201 at 5933.519 kb on + strand, within PP_5201 at 5933.519 kb on + strand, within PP_5201 at 5933.955 kb on - strand at 5933.967 kb on + strand at 5933.985 kb on - strand at 5934.023 kb on + strand at 5934.023 kb on + strand at 5934.024 kb on - strand at 5934.024 kb on - strand at 5934.024 kb on - strand at 5934.029 kb on - strand at 5934.029 kb on - strand at 5934.198 kb on + strand, within PP_5721 at 5934.198 kb on + strand, within PP_5721 at 5934.199 kb on - strand, within PP_5721 at 5934.219 kb on + strand, within PP_5721 at 5934.219 kb on + strand, within PP_5721 at 5934.219 kb on + strand, within PP_5721 at 5934.220 kb on - strand, within PP_5721 at 5934.220 kb on - strand, within PP_5721 at 5934.220 kb on - strand, within PP_5721 at 5934.220 kb on - strand, within PP_5721 at 5934.220 kb on - strand, within PP_5721 at 5934.220 kb on - strand, within PP_5721 at 5934.223 kb on - strand, within PP_5721 at 5934.223 kb on - strand, within PP_5721 at 5934.223 kb on - strand, within PP_5721 at 5934.223 kb on - strand, within PP_5721 at 5934.223 kb on - strand, within PP_5721 at 5934.309 kb on + strand, within PP_5721 at 5934.351 kb on + strand at 5934.351 kb on + strand at 5934.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5 remove 5,932,239 - PP_5200 0.13 -0.3 5,932,239 - PP_5200 0.13 -0.9 5,932,239 - PP_5200 0.13 -2.9 5,932,239 - PP_5200 0.13 -1.2 5,932,304 + PP_5200 0.18 +0.1 5,932,305 - PP_5200 0.18 -0.6 5,932,490 - PP_5200 0.32 -1.6 5,932,532 + PP_5200 0.35 +0.1 5,932,533 - PP_5200 0.35 -0.2 5,932,599 - PP_5200 0.40 -0.6 5,932,671 - PP_5200 0.45 +0.3 5,932,671 - PP_5200 0.45 -1.7 5,932,716 - PP_5200 0.49 -2.1 5,932,716 - PP_5200 0.49 -1.3 5,932,752 - PP_5200 0.51 -1.5 5,932,776 - PP_5200 0.53 -3.1 5,932,776 - PP_5200 0.53 -3.5 5,932,878 - PP_5200 0.61 -0.1 5,932,888 - PP_5200 0.62 -1.2 5,933,019 - PP_5200 0.71 +0.1 5,933,019 - PP_5200 0.71 -0.5 5,933,180 + PP_5200 0.83 +0.1 5,933,181 - PP_5200 0.84 -0.8 5,933,375 + +0.1 5,933,376 - +0.8 5,933,409 + +0.1 5,933,409 + +0.1 5,933,410 - -0.3 5,933,410 - +0.3 5,933,502 - PP_5201 0.14 +0.9 5,933,502 - PP_5201 0.14 +0.1 5,933,519 + PP_5201 0.17 +0.1 5,933,519 + PP_5201 0.17 +0.1 5,933,955 - -0.0 5,933,967 + +0.1 5,933,985 - +0.1 5,934,023 + +0.1 5,934,023 + +0.1 5,934,024 - -0.5 5,934,024 - +1.5 5,934,024 - +2.5 5,934,029 - +2.2 5,934,029 - +1.1 5,934,198 + PP_5721 0.35 -1.5 5,934,198 + PP_5721 0.35 +0.6 5,934,199 - PP_5721 0.35 -0.4 5,934,219 + PP_5721 0.44 +1.1 5,934,219 + PP_5721 0.44 +2.4 5,934,219 + PP_5721 0.44 +1.0 5,934,220 - PP_5721 0.45 +1.1 5,934,220 - PP_5721 0.45 +0.5 5,934,220 - PP_5721 0.45 +1.9 5,934,220 - PP_5721 0.45 -1.8 5,934,220 - PP_5721 0.45 +0.1 5,934,220 - PP_5721 0.45 -0.2 5,934,223 - PP_5721 0.46 +0.1 5,934,223 - PP_5721 0.46 +0.1 5,934,223 - PP_5721 0.46 +1.8 5,934,223 - PP_5721 0.46 +0.3 5,934,223 - PP_5721 0.46 +0.0 5,934,309 + PP_5721 0.85 -1.9 5,934,351 + -1.5 5,934,351 + +0.1 5,934,352 - -2.2
Or see this region's nucleotide sequence