Experiment: pH 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5188 and PP_5189 are separated by 126 nucleotides PP_5189 and PP_5190 are separated by 107 nucleotides PP_5190 and PP_5191 are separated by 88 nucleotides PP_5191 and PP_5192 are separated by 65 nucleotides
PP_5188: PP_5188 - putative transcriptional regulator (AsnC/Lrp family), at 5,918,405 to 5,918,875
_5188
PP_5189: PP_5189 - conserved protein of unknown function, at 5,919,002 to 5,919,307
_5189
PP_5190: PP_5190 - Type II secretion system protein, at 5,919,415 to 5,921,088
_5190
PP_5191: PP_5191 - conserved exported protein of unknown function, at 5,921,177 to 5,921,491
_5191
PP_5192: PP_5192 - glycine dehydrogenase, at 5,921,557 to 5,924,430
_5192
Position (kb) 5919
5920
5921
5922 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5918.425 kb on + strand at 5918.518 kb on - strand, within PP_5188 at 5918.577 kb on + strand, within PP_5188 at 5918.577 kb on + strand, within PP_5188 at 5918.577 kb on + strand, within PP_5188 at 5918.577 kb on + strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.622 kb on + strand, within PP_5188 at 5918.877 kb on - strand at 5918.906 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.999 kb on - strand at 5919.001 kb on + strand at 5919.653 kb on - strand, within PP_5190 at 5919.653 kb on - strand, within PP_5190 at 5919.653 kb on - strand, within PP_5190 at 5919.845 kb on + strand, within PP_5190 at 5920.017 kb on + strand, within PP_5190 at 5920.039 kb on + strand, within PP_5190 at 5920.040 kb on - strand, within PP_5190 at 5920.040 kb on - strand, within PP_5190 at 5920.135 kb on + strand, within PP_5190 at 5920.135 kb on + strand, within PP_5190 at 5920.136 kb on - strand, within PP_5190 at 5920.723 kb on - strand, within PP_5190 at 5920.911 kb on - strand, within PP_5190 at 5921.103 kb on + strand at 5921.245 kb on + strand, within PP_5191 at 5921.278 kb on + strand, within PP_5191 at 5921.295 kb on - strand, within PP_5191 at 5921.322 kb on + strand, within PP_5191 at 5921.525 kb on + strand at 5921.565 kb on - strand at 5921.610 kb on - strand at 5921.621 kb on - strand at 5921.642 kb on + strand at 5921.643 kb on - strand at 5921.643 kb on - strand at 5921.643 kb on - strand at 5921.643 kb on - strand at 5921.692 kb on - strand at 5921.693 kb on + strand at 5921.693 kb on + strand at 5921.694 kb on - strand at 5921.694 kb on - strand at 5921.694 kb on - strand at 5921.730 kb on + strand at 5921.731 kb on - strand at 5921.782 kb on + strand at 5921.782 kb on + strand at 5921.782 kb on + strand at 5921.782 kb on + strand at 5921.783 kb on - strand at 5921.783 kb on - strand at 5921.783 kb on - strand at 5921.918 kb on + strand, within PP_5192 at 5921.918 kb on + strand, within PP_5192 at 5921.918 kb on + strand, within PP_5192 at 5921.919 kb on - strand, within PP_5192 at 5922.026 kb on + strand, within PP_5192 at 5922.066 kb on - strand, within PP_5192 at 5922.066 kb on - strand, within PP_5192 at 5922.066 kb on - strand, within PP_5192
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5 remove 5,918,425 + +0.6 5,918,518 - PP_5188 0.24 +1.0 5,918,577 + PP_5188 0.37 +1.1 5,918,577 + PP_5188 0.37 -0.9 5,918,577 + PP_5188 0.37 +0.3 5,918,577 + PP_5188 0.37 -0.1 5,918,578 - PP_5188 0.37 -1.8 5,918,578 - PP_5188 0.37 -3.1 5,918,578 - PP_5188 0.37 +3.2 5,918,578 - PP_5188 0.37 -3.3 5,918,578 - PP_5188 0.37 +0.1 5,918,578 - PP_5188 0.37 +0.9 5,918,622 + PP_5188 0.46 -0.5 5,918,877 - -0.6 5,918,906 + +1.8 5,918,998 + -1.5 5,918,998 + +1.1 5,918,998 + +0.5 5,918,998 + -0.7 5,918,998 + -3.2 5,918,998 + -0.3 5,918,999 - +1.7 5,919,001 + +0.8 5,919,653 - PP_5190 0.14 +0.1 5,919,653 - PP_5190 0.14 +0.5 5,919,653 - PP_5190 0.14 -0.9 5,919,845 + PP_5190 0.26 -4.4 5,920,017 + PP_5190 0.36 -1.1 5,920,039 + PP_5190 0.37 -1.9 5,920,040 - PP_5190 0.37 -2.5 5,920,040 - PP_5190 0.37 -0.9 5,920,135 + PP_5190 0.43 -1.2 5,920,135 + PP_5190 0.43 -0.5 5,920,136 - PP_5190 0.43 +0.1 5,920,723 - PP_5190 0.78 +0.7 5,920,911 - PP_5190 0.89 -0.5 5,921,103 + +0.1 5,921,245 + PP_5191 0.22 -0.3 5,921,278 + PP_5191 0.32 -0.5 5,921,295 - PP_5191 0.37 +3.8 5,921,322 + PP_5191 0.46 +0.1 5,921,525 + +0.4 5,921,565 - +0.9 5,921,610 - +0.1 5,921,621 - -0.0 5,921,642 + -2.3 5,921,643 - -1.5 5,921,643 - -2.1 5,921,643 - -2.2 5,921,643 - +1.4 5,921,692 - -1.7 5,921,693 + +2.9 5,921,693 + -1.9 5,921,694 - -0.6 5,921,694 - +0.4 5,921,694 - -1.5 5,921,730 + -1.3 5,921,731 - +1.7 5,921,782 + +0.6 5,921,782 + +3.6 5,921,782 + -0.0 5,921,782 + -0.4 5,921,783 - +1.5 5,921,783 - +0.5 5,921,783 - -1.5 5,921,918 + PP_5192 0.13 -3.1 5,921,918 + PP_5192 0.13 +0.3 5,921,918 + PP_5192 0.13 +1.0 5,921,919 - PP_5192 0.13 -1.2 5,922,026 + PP_5192 0.16 +1.6 5,922,066 - PP_5192 0.18 +0.1 5,922,066 - PP_5192 0.18 +1.2 5,922,066 - PP_5192 0.18 +1.8
Or see this region's nucleotide sequence