Strain Fitness in Pseudomonas putida KT2440 around PP_5175

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
5,901,048	+		PP_5174	0.15	-0.4
5,901,216	+		PP_5174	0.31	+1.7
5,901,217	-		PP_5174	0.31	-1.5
5,901,429	+		PP_5174	0.51	-3.0
5,901,464	+				+1.1
5,901,465	-		PP_5174	0.54	-0.5
5,901,572	-		PP_5174	0.64	-1.3
5,901,584	+		PP_5174	0.66	+2.1
5,901,584	+		PP_5174	0.66	+2.2
5,901,584	+		PP_5174	0.66	-0.6
5,901,584	+		PP_5174	0.66	+5.3
5,901,585	-		PP_5174	0.66	-1.3
5,901,585	-		PP_5174	0.66	-1.4
5,901,898	-				-4.9
5,901,951	+				-0.5
5,901,952	-				-1.9
5,901,952	-				+1.4
5,901,952	-				+0.1
5,901,952	-				-1.1
5,901,952	-				+0.1
5,901,987	+				-0.3
5,901,988	-				-1.2
5,901,988	-				-1.8
5,902,029	+				+0.1
5,902,030	-				-0.1
5,902,266	+		PP_5175	0.29	+1.3
5,902,278	+		PP_5175	0.30	-2.2
5,902,320	+		PP_5175	0.34	-0.5
5,902,320	+		PP_5175	0.34	-2.2
5,902,368	+		PP_5175	0.39	+0.7
5,902,408	+		PP_5175	0.42	+0.2
5,902,408	+		PP_5175	0.42	+0.1
5,902,409	-		PP_5175	0.42	+3.8
5,902,540	+		PP_5175	0.54	-3.1
5,902,630	+		PP_5175	0.63	+0.1
5,902,630	+		PP_5175	0.63	+2.5
5,902,630	+		PP_5175	0.63	-1.1
5,902,631	-		PP_5175	0.63	+1.1
5,902,631	-		PP_5175	0.63	+0.6
5,902,631	-		PP_5175	0.63	+0.1
5,902,722	+		PP_5175	0.71	+2.1
5,902,722	+		PP_5175	0.71	-0.9
5,902,924	-		PP_5175	0.90	+0.9
5,902,973	+				+1.5
5,902,973	+				-2.9
5,902,974	-				+0.6
5,902,990	+				-0.4
5,902,990	+				-1.3
5,902,990	+				-2.6
5,902,991	-				+0.5
5,902,991	-				+0.4
5,902,991	-				-0.1
5,902,991	-				-0.2
5,902,991	-				-0.2
5,902,991	-				-0.5
5,903,087	+				+0.1
5,903,088	-				+1.6
5,903,088	-				+0.0
5,903,088	-				-0.7
5,903,103	-				+0.1
5,903,193	+				-0.0
5,903,193	+				-0.5
5,903,193	+				-0.2
5,903,194	-				-0.5
5,903,194	-				+0.4
5,903,194	-				+0.1
5,903,194	-				+0.1
5,903,194	-				-2.1
5,903,194	-				+0.3
5,903,199	+				+0.1
5,903,200	-				+0.7
5,903,252	-				+1.2
5,903,350	+		PP_5176	0.10	+0.9
5,903,474	-		PP_5176	0.39	-0.9
5,903,656	+		PP_5176	0.80	-2.0
5,903,657	-		PP_5176	0.80	-0.7
5,903,705	+				-1.4
5,903,705	+				-2.6
5,903,706	-				+0.1
5,903,706	-				+2.0
5,903,976	-		PP_5177	0.14	+0.8