Strain Fitness in Pseudomonas putida KT2440 around PP_5174

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
5,900,052	+		PP_5173	0.73	-2.9
5,900,185	+		PP_5173	0.77	+0.9
5,900,185	+		PP_5173	0.77	-1.2
5,900,185	+		PP_5173	0.77	-0.2
5,900,186	-		PP_5173	0.77	+0.1
5,900,186	-		PP_5173	0.77	+0.5
5,900,320	-		PP_5173	0.81	+2.9
5,900,320	-		PP_5173	0.81	+0.1
5,900,320	-		PP_5173	0.81	-1.0
5,900,403	+		PP_5173	0.84	+0.1
5,900,441	-		PP_5173	0.85	+0.2
5,900,448	+		PP_5173	0.86	+0.1
5,900,448	+		PP_5173	0.86	+0.1
5,900,448	+		PP_5173	0.86	-1.1
5,900,448	+		PP_5173	0.86	-2.4
5,900,448	+		PP_5173	0.86	-0.9
5,900,449	-		PP_5173	0.86	+0.1
5,900,449	-		PP_5173	0.86	+3.2
5,900,449	-		PP_5173	0.86	-0.3
5,900,462	+		PP_5173	0.86	+0.2
5,900,462	+		PP_5173	0.86	+0.5
5,900,462	+		PP_5173	0.86	-0.2
5,900,463	-		PP_5173	0.86	-0.9
5,900,463	-		PP_5173	0.86	+0.1
5,900,463	-		PP_5173	0.86	-1.2
5,900,596	-				-2.5
5,900,601	+				+0.2
5,900,601	+				+3.4
5,900,602	-				-0.2
5,900,602	-				-1.4
5,900,602	-				-1.5
5,900,602	-				-1.9
5,900,628	+				+1.9
5,900,628	+				-2.5
5,900,641	-				+0.1
5,900,641	-				+1.1
5,900,687	-				+0.5
5,900,695	-				+1.7
5,900,790	+				-1.9
5,900,829	+				-1.6
5,900,829	+				+1.1
5,901,048	+		PP_5174	0.15	-0.4
5,901,216	+		PP_5174	0.31	+1.7
5,901,217	-		PP_5174	0.31	-1.5
5,901,429	+		PP_5174	0.51	-3.0
5,901,464	+				+1.1
5,901,465	-		PP_5174	0.54	-0.5
5,901,572	-		PP_5174	0.64	-1.3
5,901,584	+		PP_5174	0.66	+2.1
5,901,584	+		PP_5174	0.66	+2.2
5,901,584	+		PP_5174	0.66	-0.6
5,901,584	+		PP_5174	0.66	+5.3
5,901,585	-		PP_5174	0.66	-1.3
5,901,585	-		PP_5174	0.66	-1.4
5,901,898	-				-4.9
5,901,951	+				-0.5
5,901,952	-				-1.9
5,901,952	-				+1.4
5,901,952	-				+0.1
5,901,952	-				-1.1
5,901,952	-				+0.1
5,901,987	+				-0.3
5,901,988	-				-1.2
5,901,988	-				-1.8
5,902,029	+				+0.1
5,902,030	-				-0.1
5,902,266	+		PP_5175	0.29	+1.3
5,902,278	+		PP_5175	0.30	-2.2
5,902,320	+		PP_5175	0.34	-0.5
5,902,320	+		PP_5175	0.34	-2.2
5,902,368	+		PP_5175	0.39	+0.7
5,902,408	+		PP_5175	0.42	+0.2
5,902,408	+		PP_5175	0.42	+0.1
5,902,409	-		PP_5175	0.42	+3.8
5,902,540	+		PP_5175	0.54	-3.1
5,902,630	+		PP_5175	0.63	+0.1
5,902,630	+		PP_5175	0.63	+2.5
5,902,630	+		PP_5175	0.63	-1.1
5,902,631	-		PP_5175	0.63	+1.1
5,902,631	-		PP_5175	0.63	+0.6
5,902,631	-		PP_5175	0.63	+0.1
5,902,722	+		PP_5175	0.71	+2.1
5,902,722	+		PP_5175	0.71	-0.9
5,902,924	-		PP_5175	0.90	+0.9