Experiment: pH 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5068 and PP_5069 are separated by 130 nucleotides PP_5069 and PP_5070 overlap by 4 nucleotides PP_5070 and PP_5071 are separated by 76 nucleotides
PP_5068: PP_5068 - conserved protein of unknown function, UPF0061 family, at 5,784,997 to 5,786,457
_5068
PP_5069: PP_5069 - Thioredoxin 2, at 5,786,588 to 5,787,022
_5069
PP_5070: PP_5070 - ParA family protein, at 5,787,019 to 5,787,792
_5070
PP_5071: PP_5071 - putative DNA-binding transcriptional regulator, at 5,787,869 to 5,788,768
_5071
Position (kb) 5786
5787
5788 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5785.627 kb on + strand, within PP_5068 at 5785.720 kb on + strand, within PP_5068 at 5785.720 kb on + strand, within PP_5068 at 5785.721 kb on - strand, within PP_5068 at 5785.721 kb on - strand, within PP_5068 at 5785.721 kb on - strand, within PP_5068 at 5785.721 kb on - strand, within PP_5068 at 5785.793 kb on - strand, within PP_5068 at 5785.793 kb on - strand, within PP_5068 at 5785.975 kb on + strand, within PP_5068 at 5785.987 kb on + strand, within PP_5068 at 5785.987 kb on + strand, within PP_5068 at 5785.987 kb on + strand, within PP_5068 at 5785.988 kb on - strand, within PP_5068 at 5786.092 kb on + strand, within PP_5068 at 5786.092 kb on + strand, within PP_5068 at 5786.093 kb on - strand, within PP_5068 at 5786.200 kb on + strand, within PP_5068 at 5786.200 kb on + strand, within PP_5068 at 5786.275 kb on + strand, within PP_5068 at 5786.333 kb on - strand at 5786.333 kb on - strand at 5786.401 kb on + strand at 5786.401 kb on + strand at 5786.604 kb on + strand at 5786.605 kb on - strand at 5786.732 kb on + strand, within PP_5069 at 5786.733 kb on - strand, within PP_5069 at 5786.888 kb on - strand, within PP_5069 at 5786.910 kb on + strand, within PP_5069 at 5786.910 kb on + strand, within PP_5069 at 5786.910 kb on + strand, within PP_5069 at 5786.911 kb on - strand, within PP_5069 at 5786.911 kb on - strand, within PP_5069 at 5786.911 kb on - strand, within PP_5069 at 5786.911 kb on - strand, within PP_5069 at 5786.911 kb on - strand, within PP_5069 at 5786.911 kb on - strand, within PP_5069 at 5787.021 kb on - strand at 5787.146 kb on + strand, within PP_5070 at 5787.146 kb on + strand, within PP_5070 at 5787.146 kb on + strand, within PP_5070 at 5787.147 kb on - strand, within PP_5070 at 5787.415 kb on - strand, within PP_5070 at 5787.415 kb on - strand, within PP_5070 at 5787.422 kb on + strand, within PP_5070 at 5787.422 kb on + strand, within PP_5070 at 5787.551 kb on + strand, within PP_5070 at 5787.551 kb on + strand, within PP_5070 at 5787.552 kb on - strand, within PP_5070 at 5787.552 kb on - strand, within PP_5070 at 5787.552 kb on - strand, within PP_5070 at 5787.552 kb on - strand, within PP_5070 at 5787.555 kb on + strand, within PP_5070 at 5787.656 kb on + strand, within PP_5070 at 5787.807 kb on + strand at 5787.808 kb on - strand at 5787.825 kb on + strand at 5787.826 kb on - strand at 5787.826 kb on - strand at 5787.993 kb on + strand, within PP_5071 at 5787.993 kb on + strand, within PP_5071 at 5787.993 kb on + strand, within PP_5071 at 5787.994 kb on - strand, within PP_5071
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5 remove 5,785,627 + PP_5068 0.43 +0.9 5,785,720 + PP_5068 0.49 -0.7 5,785,720 + PP_5068 0.49 +0.9 5,785,721 - PP_5068 0.50 -0.4 5,785,721 - PP_5068 0.50 -1.7 5,785,721 - PP_5068 0.50 +0.4 5,785,721 - PP_5068 0.50 +1.1 5,785,793 - PP_5068 0.54 +1.1 5,785,793 - PP_5068 0.54 +0.7 5,785,975 + PP_5068 0.67 -0.8 5,785,987 + PP_5068 0.68 +0.6 5,785,987 + PP_5068 0.68 -1.3 5,785,987 + PP_5068 0.68 +1.1 5,785,988 - PP_5068 0.68 -1.9 5,786,092 + PP_5068 0.75 -0.0 5,786,092 + PP_5068 0.75 +0.5 5,786,093 - PP_5068 0.75 -0.5 5,786,200 + PP_5068 0.82 +2.3 5,786,200 + PP_5068 0.82 +0.7 5,786,275 + PP_5068 0.87 +2.7 5,786,333 - -1.3 5,786,333 - -0.3 5,786,401 + +0.9 5,786,401 + -3.2 5,786,604 + -0.0 5,786,605 - +0.6 5,786,732 + PP_5069 0.33 -4.7 5,786,733 - PP_5069 0.33 +0.6 5,786,888 - PP_5069 0.69 -2.1 5,786,910 + PP_5069 0.74 +2.1 5,786,910 + PP_5069 0.74 +0.1 5,786,910 + PP_5069 0.74 -0.2 5,786,911 - PP_5069 0.74 +1.1 5,786,911 - PP_5069 0.74 -2.0 5,786,911 - PP_5069 0.74 -3.1 5,786,911 - PP_5069 0.74 +0.1 5,786,911 - PP_5069 0.74 -0.5 5,786,911 - PP_5069 0.74 -2.8 5,787,021 - +1.1 5,787,146 + PP_5070 0.16 +0.6 5,787,146 + PP_5070 0.16 -1.7 5,787,146 + PP_5070 0.16 -0.9 5,787,147 - PP_5070 0.17 -0.2 5,787,415 - PP_5070 0.51 -0.4 5,787,415 - PP_5070 0.51 -2.3 5,787,422 + PP_5070 0.52 +1.1 5,787,422 + PP_5070 0.52 -3.6 5,787,551 + PP_5070 0.69 -0.7 5,787,551 + PP_5070 0.69 -0.9 5,787,552 - PP_5070 0.69 -0.9 5,787,552 - PP_5070 0.69 +0.1 5,787,552 - PP_5070 0.69 +0.2 5,787,552 - PP_5070 0.69 +0.1 5,787,555 + PP_5070 0.69 -1.3 5,787,656 + PP_5070 0.82 -0.6 5,787,807 + +0.6 5,787,808 - +0.9 5,787,825 + -2.9 5,787,826 - -3.2 5,787,826 - +2.1 5,787,993 + PP_5071 0.14 +2.9 5,787,993 + PP_5071 0.14 -1.1 5,787,993 + PP_5071 0.14 +0.2 5,787,994 - PP_5071 0.14 +1.2
Or see this region's nucleotide sequence