Strain Fitness in Pseudomonas putida KT2440 around PP_4926

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
5,603,541	-				-0.0
5,603,629	+		PP_4925	0.19	+0.5
5,603,668	+		PP_4925	0.23	+3.2
5,603,788	-		PP_4925	0.38	-0.0
5,603,812	+		PP_4925	0.41	+3.0
5,603,875	-		PP_4925	0.49	+3.0
5,603,888	+		PP_4925	0.51	-1.0
5,603,909	-		PP_4925	0.53	-2.6
5,603,947	+		PP_4925	0.58	-0.0
5,603,948	-		PP_4925	0.58	+2.3
5,604,266	+				-0.0
5,604,272	+				+0.4
5,604,278	+				-1.8
5,604,460	-				-2.3
5,604,498	-				+2.0
5,604,501	+				-1.7
5,604,501	+				-4.5
5,604,518	+				-4.7
5,604,587	+				+1.7
5,604,700	+		PP_4926	0.12	-1.7
5,604,717	-		PP_4926	0.13	+1.5
5,604,772	+		PP_4926	0.17	+0.8
5,604,779	+		PP_4926	0.18	+0.4
5,604,779	+		PP_4926	0.18	+1.6
5,604,836	+		PP_4926	0.22	-0.0
5,604,914	+		PP_4926	0.27	+1.6
5,604,933	-		PP_4926	0.29	-0.0
5,604,978	+		PP_4926	0.32	-0.0
5,604,979	-		PP_4926	0.32	-2.8
5,605,204	+		PP_4926	0.48	-0.9
5,605,204	+		PP_4926	0.48	-0.5
5,605,204	+		PP_4926	0.48	+0.6
5,605,204	+		PP_4926	0.48	+0.8
5,605,205	-		PP_4926	0.48	+3.2
5,605,205	-		PP_4926	0.48	-0.0
5,605,381	+		PP_4926	0.60	-0.5
5,605,382	-		PP_4926	0.60	+0.5
5,605,660	-		PP_4926	0.80	+1.8
5,605,780	+		PP_4926	0.88	+1.4
5,605,857	+				-1.9
5,605,858	-				+3.3
5,605,946	+				+0.2
5,605,977	+				+1.3
5,605,983	+				-3.6
5,605,983	+				+0.3
5,605,983	+				-3.9
5,605,983	+				-1.3
5,605,983	+				+1.0
5,605,983	+				+0.5
5,605,983	+				+3.5
5,605,983	+				+3.0
5,605,983	+				-0.6
5,605,983	+				-1.5
5,605,983	+				-1.2
5,605,983	+				-0.9
5,605,984	-				+4.1
5,605,984	-				-1.2
5,605,984	-				-0.0
5,605,984	-				-0.0
5,605,984	-				-1.5
5,605,984	-				-0.0
5,605,984	-				-0.0
5,606,076	-				-1.0
5,606,164	-		PP_4927	0.10	-2.0
5,606,164	-		PP_4927	0.10	-3.7
5,606,164	-		PP_4927	0.10	-1.1
5,606,164	-		PP_4927	0.10	+0.6
5,606,164	-		PP_4927	0.10	-0.1
5,606,234	+		PP_4927	0.13	+0.9
5,606,234	+		PP_4927	0.13	+1.0
5,606,235	-		PP_4927	0.13	-2.2
5,606,235	-		PP_4927	0.13	-0.1
5,606,352	-		PP_4927	0.19	-0.8
5,606,499	-		PP_4927	0.25	-2.3
5,606,520	+		PP_4927	0.26	+0.4
5,606,573	+		PP_4927	0.29	+1.0
5,606,573	+		PP_4927	0.29	-0.4
5,606,574	-		PP_4927	0.29	+0.7
5,606,574	-		PP_4927	0.29	+0.9
5,606,574	-		PP_4927	0.29	-3.5
5,606,574	-				-0.0
5,606,582	+		PP_4927	0.29	-1.6
5,606,726	-		PP_4927	0.36	-3.0
5,606,762	+		PP_4927	0.37	-0.2
5,606,910	-		PP_4927	0.44	-0.0