Strain Fitness in Pseudomonas putida KT2440 around PP_4922

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
5,593,281	+		PP_4921	0.40	-0.0
5,593,282	-		PP_4921	0.40	+0.7
5,593,282	-		PP_4921	0.40	-0.5
5,593,323	+		PP_4921	0.43	-1.0
5,593,323	+		PP_4921	0.43	+3.2
5,593,377	+				-0.0
5,593,559	+		PP_4921	0.61	+0.7
5,593,560	-		PP_4921	0.62	+2.4
5,593,560	-		PP_4921	0.62	-0.9
5,593,560	-		PP_4921	0.62	+0.6
5,593,709	-		PP_4921	0.73	-1.0
5,593,832	-		PP_4921	0.83	-0.7
5,593,908	-		PP_4921	0.89	+3.7
5,594,077	+				-1.6
5,594,077	+				-0.0
5,594,077	+				-0.2
5,594,078	-				+3.3
5,594,086	+				-0.7
5,594,086	+				-0.4
5,594,086	+				-2.3
5,594,086	+				-3.8
5,594,087	-				-2.3
5,594,087	-				-0.6
5,594,087	-				-0.0
5,594,087	-				+1.6
5,594,185	-				-0.5
5,594,185	-				-0.8
5,594,185	-				-1.3
5,594,212	-				-0.2
5,594,301	+				+0.8
5,594,301	+				+1.8
5,594,302	-				-0.6
5,594,361	-				-1.9
5,594,550	+		PP_4922	0.19	-5.2
5,594,551	-		PP_4922	0.19	-4.8
5,594,551	-		PP_4922	0.19	+1.6
5,594,616	+		PP_4922	0.22	-4.4
5,594,616	+		PP_4922	0.22	-4.7
5,594,617	-		PP_4922	0.22	-2.3
5,594,721	+		PP_4922	0.28	-1.6
5,594,722	-		PP_4922	0.28	-3.4
5,594,943	+		PP_4922	0.40	-4.2
5,594,943	+		PP_4922	0.40	-3.5
5,594,943	+		PP_4922	0.40	-4.0
5,594,944	-		PP_4922	0.40	-4.9
5,594,982	+		PP_4922	0.42	-6.0
5,594,983	-		PP_4922	0.42	-5.3
5,595,081	+		PP_4922	0.47	-4.7
5,595,082	-		PP_4922	0.47	-4.5
5,595,082	-		PP_4922	0.47	-4.3
5,595,114	+		PP_4922	0.49	+1.0
5,595,211	-		PP_4922	0.54	-4.0
5,595,402	-		PP_4922	0.64	-5.4
5,595,584	+		PP_4922	0.74	-5.7
5,595,585	-		PP_4922	0.74	-6.0
5,595,585	-		PP_4922	0.74	-4.9
5,595,612	+		PP_4922	0.75	-3.3
5,595,612	+		PP_4922	0.75	-0.0
5,595,612	+		PP_4922	0.75	-4.0
5,595,613	-		PP_4922	0.75	-3.9
5,595,648	+		PP_4922	0.77	-5.1
5,595,648	+		PP_4922	0.77	-2.3
5,595,648	+		PP_4922	0.77	-1.6
5,595,648	+		PP_4922	0.77	-4.3
5,595,648	+		PP_4922	0.77	-2.0
5,595,648	+		PP_4922	0.77	-0.0
5,595,648	+		PP_4922	0.77	-4.4
5,595,649	-		PP_4922	0.77	-0.0
5,595,649	-		PP_4922	0.77	-0.0
5,595,883	-		PP_4922	0.90	-0.0
5,595,883	-		PP_4922	0.90	-3.5
5,595,883	-		PP_4922	0.90	-4.7
5,595,987	+				-4.9
5,595,987	+				-4.5
5,595,987	+				-0.3
5,595,988	-				-4.1
5,595,988	-				-3.8
5,595,988	-				-3.8
5,595,988	-				-1.0
5,596,103	-				-2.6
5,596,187	+				-3.8
5,596,187	+				-2.6
5,596,187	+				-1.6
5,596,188	-				-0.2
5,596,188	-				-4.1
5,596,188	-				-0.1
5,596,436	+				+0.2
5,596,436	+				+2.3
5,596,437	-				-0.3
5,596,437	-				-0.0
5,596,475	+				-0.5
5,596,499	+				-0.7
5,596,499	+				-0.0
5,596,499	+				+0.3
5,596,500	-				+2.6
5,596,657	-		PP_4923	0.11	+0.2
5,596,929	+		PP_4923	0.30	-0.0
5,596,930	-		PP_4923	0.30	-2.7
5,597,074	-		PP_4923	0.40	-2.8