Experiment: pH 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4850 and PP_4851 are separated by 9 nucleotides PP_4851 and PP_4852 are separated by 30 nucleotides
PP_4850: PP_4850 - conserved membrane protein of unknown function, at 5,517,513 to 5,518,580
_4850
PP_4851: PP_4851 - Phosphate starvation-inducible protein, PSIF, at 5,518,590 to 5,518,910
_4851
PP_4852: PP_4852 - Transcriptional regulator, AraC family, at 5,518,941 to 5,519,729
_4852
Position (kb) 5518
5519 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5517.606 kb on + strand at 5517.607 kb on - strand at 5517.679 kb on + strand, within PP_4850 at 5517.679 kb on + strand, within PP_4850 at 5517.849 kb on + strand, within PP_4850 at 5517.850 kb on - strand, within PP_4850 at 5517.850 kb on - strand, within PP_4850 at 5517.850 kb on - strand, within PP_4850 at 5518.171 kb on + strand, within PP_4850 at 5518.171 kb on + strand, within PP_4850 at 5518.520 kb on + strand at 5518.520 kb on + strand at 5518.521 kb on - strand at 5518.580 kb on + strand at 5518.928 kb on + strand at 5518.928 kb on + strand at 5518.983 kb on - strand at 5519.182 kb on - strand, within PP_4852 at 5519.322 kb on + strand, within PP_4852 at 5519.328 kb on + strand at 5519.467 kb on + strand, within PP_4852 at 5519.467 kb on + strand, within PP_4852 at 5519.468 kb on - strand, within PP_4852 at 5519.471 kb on + strand, within PP_4852 at 5519.471 kb on + strand, within PP_4852 at 5519.471 kb on + strand, within PP_4852 at 5519.471 kb on + strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.480 kb on - strand, within PP_4852 at 5519.500 kb on + strand, within PP_4852 at 5519.500 kb on + strand, within PP_4852 at 5519.501 kb on - strand, within PP_4852 at 5519.501 kb on - strand, within PP_4852 at 5519.501 kb on - strand, within PP_4852 at 5519.501 kb on - strand, within PP_4852 at 5519.501 kb on - strand, within PP_4852 at 5519.501 kb on - strand, within PP_4852 at 5519.603 kb on - strand, within PP_4852 at 5519.603 kb on - strand, within PP_4852 at 5519.675 kb on - strand at 5519.717 kb on - strand at 5519.717 kb on - strand at 5519.717 kb on - strand at 5519.717 kb on - strand at 5519.721 kb on - strand at 5519.762 kb on - strand at 5519.767 kb on + strand at 5519.768 kb on - strand at 5519.768 kb on - strand at 5519.769 kb on + strand at 5519.792 kb on + strand at 5519.792 kb on + strand at 5519.796 kb on - strand at 5519.877 kb on + strand at 5519.877 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5 remove 5,517,606 + -0.2 5,517,607 - -1.2 5,517,679 + PP_4850 0.16 -2.6 5,517,679 + PP_4850 0.16 +1.4 5,517,849 + PP_4850 0.31 -3.3 5,517,850 - PP_4850 0.32 -1.6 5,517,850 - PP_4850 0.32 +0.4 5,517,850 - PP_4850 0.32 -0.7 5,518,171 + PP_4850 0.62 +1.7 5,518,171 + PP_4850 0.62 +0.3 5,518,520 + -1.9 5,518,520 + -3.0 5,518,521 - +0.8 5,518,580 + +0.3 5,518,928 + +3.3 5,518,928 + -0.0 5,518,983 - -0.2 5,519,182 - PP_4852 0.31 +0.2 5,519,322 + PP_4852 0.48 -0.7 5,519,328 + -2.0 5,519,467 + PP_4852 0.67 +0.1 5,519,467 + PP_4852 0.67 -3.8 5,519,468 - PP_4852 0.67 +0.3 5,519,471 + PP_4852 0.67 +1.0 5,519,471 + PP_4852 0.67 +1.0 5,519,471 + PP_4852 0.67 -0.2 5,519,471 + PP_4852 0.67 +0.6 5,519,472 - PP_4852 0.67 -0.3 5,519,472 - PP_4852 0.67 -0.6 5,519,472 - PP_4852 0.67 -0.5 5,519,472 - PP_4852 0.67 -0.3 5,519,472 - PP_4852 0.67 -0.2 5,519,472 - PP_4852 0.67 +0.3 5,519,472 - PP_4852 0.67 -1.6 5,519,472 - PP_4852 0.67 -1.1 5,519,480 - PP_4852 0.68 -1.1 5,519,500 + PP_4852 0.71 -0.6 5,519,500 + PP_4852 0.71 -0.9 5,519,501 - PP_4852 0.71 +1.3 5,519,501 - PP_4852 0.71 +0.6 5,519,501 - PP_4852 0.71 -0.8 5,519,501 - PP_4852 0.71 -0.3 5,519,501 - PP_4852 0.71 +4.7 5,519,501 - PP_4852 0.71 -0.1 5,519,603 - PP_4852 0.84 +0.5 5,519,603 - PP_4852 0.84 -4.7 5,519,675 - -2.8 5,519,717 - -1.7 5,519,717 - +1.3 5,519,717 - -2.8 5,519,717 - +0.5 5,519,721 - -2.1 5,519,762 - +1.0 5,519,767 + +0.3 5,519,768 - +0.1 5,519,768 - -1.1 5,519,769 + -0.3 5,519,792 + -1.7 5,519,792 + -0.7 5,519,796 - +0.1 5,519,877 + +0.3 5,519,877 + +0.5
Or see this region's nucleotide sequence