Strain Fitness in Pseudomonas putida KT2440 around PP_4835

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
5,500,691	+		PP_4834	0.18	-0.2
5,500,691	+		PP_4834	0.18	+0.7
5,500,691	+		PP_4834	0.18	+3.2
5,500,812	+		PP_4834	0.32	-1.0
5,500,813	-		PP_4834	0.33	+2.7
5,500,813	-		PP_4834	0.33	+1.4
5,500,813	-		PP_4834	0.33	+0.1
5,500,835	+		PP_4834	0.35	-0.0
5,500,835	+		PP_4834	0.35	-1.0
5,500,835	+		PP_4834	0.35	-0.5
5,500,835	+		PP_4834	0.35	+4.2
5,500,835	+		PP_4834	0.35	-1.4
5,500,835	+		PP_4834	0.35	+1.5
5,500,835	+		PP_4834	0.35	-0.3
5,500,836	-		PP_4834	0.35	+0.6
5,500,836	-		PP_4834	0.35	-1.0
5,500,836	-		PP_4834	0.35	-0.4
5,500,836	-		PP_4834	0.35	-0.0
5,501,261	+		PP_4834	0.85	+1.6
5,501,261	+		PP_4834	0.85	-0.8
5,501,261	+		PP_4834	0.85	-0.4
5,501,261	+		PP_4834	0.85	+0.4
5,501,262	-		PP_4834	0.85	-0.7
5,501,262	-		PP_4834	0.85	+4.7
5,501,262	-		PP_4834	0.85	-1.4
5,501,262	-		PP_4834	0.85	+0.9
5,501,265	+		PP_4834	0.85	-1.0
5,501,265	+		PP_4834	0.85	-1.6
5,501,279	+		PP_4834	0.87	-3.5
5,501,279	+		PP_4834	0.87	-0.8
5,501,280	-		PP_4834	0.87	-1.0
5,501,280	-		PP_4834	0.87	-0.4
5,501,280	-		PP_4834	0.87	-0.0
5,501,280	-		PP_4834	0.87	+0.7
5,501,448	+				+1.0
5,501,515	+				-0.9
5,501,556	+				+0.8
5,501,560	+				+4.7
5,501,560	+				-2.8
5,501,560	+				+1.4
5,501,560	+				-0.7
5,501,561	-				-1.8
5,501,561	-				-0.0
5,501,563	-				+0.3
5,501,563	-				+3.6
5,501,572	+				+1.1
5,501,573	-				-0.0
5,501,578	-				-2.8
5,501,578	-				+2.3
5,501,578	-				-0.0
5,501,935	+		PP_4835	0.84	-2.0
5,501,936	-		PP_4835	0.84	+2.3
5,501,936	-		PP_4835	0.84	-4.2
5,501,969	+				+1.7
5,501,991	-				+2.4
5,502,111	+		PP_4836	0.14	+2.8
5,502,112	-		PP_4836	0.14	+2.3
5,502,186	+		PP_4836	0.29	+3.4
5,502,193	-		PP_4836	0.30	-2.0
5,502,366	+		PP_4836	0.66	+2.3
5,502,367	-		PP_4836	0.66	+1.0
5,502,478	+		PP_4836	0.89	-1.8
5,502,531	+				+1.4
5,502,531	+				-1.0
5,502,532	-				-0.7
5,502,583	-				+1.3
5,502,665	+		PP_4837	0.26	-0.0
5,502,935	+		PP_4837	0.88	-2.3
5,502,935	+		PP_4837	0.88	-3.6
5,502,936	-		PP_4837	0.89	-0.1
5,502,936	-		PP_4837	0.89	-0.3