Strain Fitness in Pseudomonas putida KT2440 around PP_4725

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
5,372,574	+		PP_4724	0.48	+0.1
5,372,574	+		PP_4724	0.48	+0.1
5,372,596	-		PP_4724	0.50	+0.1
5,372,596	-		PP_4724	0.50	-2.5
5,372,667	+		PP_4724	0.56	+0.1
5,372,809	+		PP_4724	0.68	+0.1
5,372,891	-		PP_4724	0.75	+0.1
5,372,977	+		PP_4724	0.83	+0.1
5,373,001	-		PP_4724	0.85	+0.1
5,373,065	-				+1.1
5,373,065	-				-1.9
5,373,065	-				-1.9
5,373,077	+				-0.9
5,373,078	-				+0.1
5,373,078	-				+1.1
5,373,078	-				+0.1
5,373,130	+				+0.1
5,373,131	-				+0.1
5,373,183	-				+0.0
5,373,232	+				+0.1
5,373,233	-				-0.2
5,373,233	-				-0.1
5,373,233	-				+0.5
5,373,233	-				-0.2
5,373,297	+				+0.1
5,373,298	-				-1.5
5,373,306	-				-4.8
5,373,306	-				-2.5
5,373,490	+				+1.7
5,373,491	-				-1.4
5,374,699	-		PP_4726	0.34	-1.8
5,374,727	-		PP_4726	0.37	+1.1
5,374,807	-		PP_4726	0.44	-3.1
5,375,077	-		PP_4726	0.68	+0.1
5,375,236	-		PP_4726	0.82	-0.9
5,375,236	-		PP_4726	0.82	+1.1