Strain Fitness in Pseudomonas putida KT2440 around PP_4659

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
5,285,296	+		PP_4658	0.89	-0.9
5,285,296	+		PP_4658	0.89	-0.8
5,285,297	-				+0.1
5,285,297	-		PP_4658	0.89	+1.1
5,285,297	-		PP_4658	0.89	+0.4
5,285,603	-				-0.2
5,285,636	+				-0.2
5,285,636	+				+0.5
5,285,637	-				+0.9
5,285,637	-				-1.5
5,285,637	-				-0.4
5,285,639	+				+1.2
5,285,639	+				+1.6
5,285,640	-				-1.2
5,285,640	-				+0.1
5,285,640	-				+0.0
5,285,657	-				+0.3
5,285,756	+				-0.4
5,285,756	+				+2.2
5,285,757	-				+0.7
5,285,757	-				-3.0
5,285,783	-				+0.6
5,285,804	+				-0.3
5,285,804	+				-2.5
5,285,804	+				-0.4
5,285,804	+				-0.6
5,285,805	-		PP_4659	0.10	-1.9
5,285,805	-		PP_4659	0.10	-0.9
5,285,805	-		PP_4659	0.10	+0.8
5,285,805	-		PP_4659	0.10	-3.2
5,285,805	-		PP_4659	0.10	+2.6
5,285,816	+		PP_4659	0.11	-3.9
5,285,816	+		PP_4659	0.11	-2.7
5,285,894	+		PP_4659	0.15	-3.0
5,285,894	+		PP_4659	0.15	+0.1
5,285,895	-		PP_4659	0.15	-0.7
5,285,926	-		PP_4659	0.17	-1.7
5,286,150	-		PP_4659	0.31	+0.9
5,286,150	-		PP_4659	0.31	+1.4
5,286,167	+		PP_4659	0.32	+0.2
5,286,167	+		PP_4659	0.32	+1.6
5,286,167	+		PP_4659	0.32	+0.5
5,286,168	-		PP_4659	0.32	+0.4
5,286,168	-		PP_4659	0.32	-0.7
5,286,168	-		PP_4659	0.32	+0.1
5,286,168	-		PP_4659	0.32	+0.4
5,286,171	+		PP_4659	0.32	-0.7
5,286,171	+		PP_4659	0.32	+1.7
5,286,171	+		PP_4659	0.32	+1.1
5,286,172	-		PP_4659	0.32	+0.2
5,286,172	-		PP_4659	0.32	-0.8
5,286,360	-		PP_4659	0.43	-1.1
5,286,413	+		PP_4659	0.46	+0.2
5,286,413	+		PP_4659	0.46	+0.1
5,286,413	+		PP_4659	0.46	+2.6
5,286,414	-		PP_4659	0.47	-0.4
5,286,414	-		PP_4659	0.47	-1.7
5,286,426	+		PP_4659	0.47	-0.1
5,286,427	-		PP_4659	0.47	-0.1
5,286,519	+		PP_4659	0.53	-0.8
5,286,520	-		PP_4659	0.53	+0.4
5,286,521	+		PP_4659	0.53	+0.8
5,286,521	+		PP_4659	0.53	+0.2
5,286,521	+		PP_4659	0.53	-0.1
5,286,522	-		PP_4659	0.53	-3.0
5,286,522	-		PP_4659	0.53	+0.7
5,286,575	+		PP_4659	0.56	-0.3
5,286,575	+		PP_4659	0.56	-1.4
5,286,576	-		PP_4659	0.56	-2.7
5,286,598	-		PP_4659	0.58	-0.7
5,286,656	+		PP_4659	0.61	+0.1
5,286,657	-		PP_4659	0.61	-0.9
5,286,657	-		PP_4659	0.61	-3.9
5,286,657	-		PP_4659	0.61	+0.6
5,286,657	-		PP_4659	0.61	+1.2
5,286,684	+		PP_4659	0.63	-1.8
5,286,684	+		PP_4659	0.63	-2.0
5,286,684	+		PP_4659	0.63	-0.3
5,286,684	+		PP_4659	0.63	+1.3
5,286,684	+		PP_4659	0.63	-0.4
5,286,684	+		PP_4659	0.63	+0.2
5,286,685	-				+2.1
5,286,685	-		PP_4659	0.63	+0.2
5,286,685	-		PP_4659	0.63	-0.6
5,286,685	-		PP_4659	0.63	+2.0
5,286,992	+		PP_4659	0.81	-0.2
5,286,992	+		PP_4659	0.81	-1.7
5,286,992	+		PP_4659	0.81	+0.6
5,286,992	+		PP_4659	0.81	-0.2
5,286,992	+		PP_4659	0.81	+1.0
5,286,993	-		PP_4659	0.81	-1.1
5,286,993	-		PP_4659	0.81	-0.4
5,286,993	-		PP_4659	0.81	+0.5
5,287,031	+		PP_4659	0.84	+4.8
5,287,043	+		PP_4659	0.84	+0.2
5,287,043	+		PP_4659	0.84	+1.1
5,287,043	+		PP_4659	0.84	+0.1
5,287,044	-		PP_4659	0.84	-0.0
5,287,089	+		PP_4659	0.87	+2.1
5,287,092	+		PP_4659	0.87	-2.2
5,287,093	-		PP_4659	0.87	+0.1
5,287,106	+		PP_4659	0.88	+0.7
5,287,196	+				+0.1
5,287,196	+				-1.0
5,287,197	-				-3.4
5,287,197	-				-0.7
5,287,284	-				-1.5
5,287,299	+				+0.1
5,287,299	+				+0.1
5,287,299	+				-0.2
5,287,342	+				+0.0
5,287,433	+				-0.7
5,287,434	-				+2.1
5,287,434	-				+0.3
5,287,505	+				+1.3
5,287,506	-				+1.7
5,287,506	-				-0.2
5,287,506	-				+0.1
5,287,506	-				+0.4
5,287,506	-				-0.1
5,287,530	-		PP_4660	0.12	+0.6
5,288,126	+		PP_4660	0.78	+0.9
5,288,143	-		PP_4660	0.80	+0.1
5,288,143	-		PP_4660	0.80	+1.4
5,288,291	-				+0.5