Strain Fitness in Pseudomonas putida KT2440 around PP_4649

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
5,273,331	+		PP_4648	0.42	-0.1
5,273,331	+		PP_4648	0.42	+1.0
5,273,332	-		PP_4648	0.42	+0.5
5,273,344	+		PP_4648	0.44	+0.1
5,273,433	+		PP_4648	0.51	-1.4
5,273,530	+		PP_4648	0.60	+3.1
5,273,531	-		PP_4648	0.60	+1.9
5,273,625	+		PP_4648	0.69	+0.5
5,273,626	-		PP_4648	0.69	-0.5
5,273,626	-		PP_4648	0.69	+0.3
5,273,646	+		PP_4648	0.70	+0.9
5,273,646	+		PP_4648	0.70	+3.9
5,273,646	+		PP_4648	0.70	+1.0
5,273,647	-		PP_4648	0.70	-2.3
5,273,795	-		PP_4648	0.84	+0.1
5,273,795	-		PP_4648	0.84	-5.1
5,273,797	+				-0.9
5,273,797	+		PP_4648	0.84	+0.7
5,273,851	+		PP_4648	0.89	+1.0
5,273,852	-		PP_4648	0.89	+2.7
5,273,852	-		PP_4648	0.89	+0.0
5,273,865	+		PP_4648	0.90	+0.4
5,273,865	+		PP_4648	0.90	+0.2
5,273,865	+		PP_4648	0.90	+2.0
5,273,865	+		PP_4648	0.90	-0.3
5,273,866	-				+2.3
5,273,872	+				+2.0
5,273,873	-				+0.9
5,273,873	-				-3.8
5,273,873	-				+0.4
5,273,976	+				+1.0
5,273,976	+				-0.4
5,274,041	-				-3.4
5,274,041	-				+0.9
5,274,041	-				-1.3
5,274,082	+				-3.6
5,274,082	+				-0.8
5,274,082	+				+1.8
5,274,083	-				-3.9
5,274,250	+				-0.9
5,274,250	+				-1.0
5,274,251	-				+0.3
5,274,292	+				-1.2
5,274,292	+				-0.6
5,274,292	+				+1.3
5,274,292	+				+1.1
5,274,293	-				-1.0
5,274,293	-				+0.3
5,274,293	-				-3.2
5,274,293	-				-1.4
5,274,293	-				-0.3
5,274,295	+				+0.2
5,274,295	+				+0.1
5,274,295	+				+4.0
5,274,296	-				+0.8
5,274,309	-				-1.1
5,274,309	-				+0.2
5,274,310	+				-0.2
5,274,310	+				-2.1
5,274,310	+				-3.2
5,274,310	+				+0.1
5,274,310	+				-1.3
5,274,311	-				-0.8
5,274,311	-				+1.2
5,274,311	-				-0.8
5,274,311	-				-1.3
5,274,320	+				-0.3
5,274,342	-				+1.5
5,274,416	+		PP_4650	0.17	+0.8
5,274,417	-		PP_4650	0.17	-1.0
5,274,417	-		PP_4650	0.17	+3.7
5,274,445	+		PP_4650	0.19	-0.2
5,274,446	-		PP_4650	0.20	-1.4
5,274,462	+		PP_4650	0.21	+1.7
5,274,463	-		PP_4650	0.21	+0.1
5,274,487	+		PP_4650	0.24	-0.9
5,274,523	+		PP_4650	0.27	-4.9
5,274,524	-		PP_4650	0.27	-1.7
5,274,746	-		PP_4650	0.49	+4.9
5,274,746	-		PP_4650	0.49	-1.4
5,274,899	+		PP_4650	0.64	-1.5
5,274,900	-		PP_4650	0.65	-1.5
5,275,006	+		PP_4650	0.75	-2.3
5,275,007	-		PP_4650	0.75	-0.6
5,275,030	+		PP_4650	0.77	-1.2
5,275,031	-		PP_4650	0.78	-3.0
5,275,198	+				-2.2
5,275,198	+				+0.2
5,275,198	+				+0.1
5,275,198	+				+1.5
5,275,198	+				+0.1
5,275,199	-				-0.9
5,275,199	-				-1.0
5,275,199	-				-0.9
5,275,199	-				+0.0