Strain Fitness in Pseudomonas putida KT2440 around PP_4431

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
5,025,734	+				+2.8
5,025,735	-				+0.4
5,025,804	+		PP_4430	0.12	+0.9
5,025,805	-		PP_4430	0.12	-3.4
5,025,805	-		PP_4430	0.12	+0.5
5,025,805	-		PP_4430	0.12	+0.4
5,025,805	-		PP_4430	0.12	-0.9
5,025,836	+		PP_4430	0.15	+1.2
5,025,837	-		PP_4430	0.15	-0.6
5,025,837	-		PP_4430	0.15	-1.3
5,025,837	-		PP_4430	0.15	+0.7
5,025,878	+		PP_4430	0.19	+0.3
5,025,878	+		PP_4430	0.19	+3.2
5,025,878	+		PP_4430	0.19	-0.7
5,025,878	+		PP_4430	0.19	-0.0
5,025,879	-		PP_4430	0.19	-2.1
5,025,879	-		PP_4430	0.19	-1.1
5,025,904	+		PP_4430	0.22	+0.4
5,025,905	-		PP_4430	0.22	+0.7
5,025,905	-		PP_4430	0.22	+0.8
5,025,907	+		PP_4430	0.22	+1.5
5,025,908	-		PP_4430	0.22	-0.2
5,025,945	+		PP_4430	0.26	+1.1
5,025,946	-		PP_4430	0.26	+3.6
5,026,055	+		PP_4430	0.37	+2.3
5,026,055	+		PP_4430	0.37	+0.2
5,026,056	-		PP_4430	0.37	+0.0
5,026,056	-		PP_4430	0.37	+1.2
5,026,112	+		PP_4430	0.43	+0.8
5,026,112	+		PP_4430	0.43	-3.8
5,026,112	+		PP_4430	0.43	-2.6
5,026,112	+		PP_4430	0.43	-0.8
5,026,113	-		PP_4430	0.43	-0.8
5,026,113	-		PP_4430	0.43	-0.2
5,026,113	-		PP_4430	0.43	-2.2
5,026,113	-		PP_4430	0.43	-0.0
5,026,113	-		PP_4430	0.43	+5.5
5,026,144	+		PP_4430	0.46	-1.1
5,026,144	+		PP_4430	0.46	-1.4
5,026,144	+		PP_4430	0.46	+1.0
5,026,145	-		PP_4430	0.46	-1.4
5,026,145	-		PP_4430	0.46	-2.4
5,026,207	+		PP_4430	0.52	+0.2
5,026,207	+		PP_4430	0.52	-0.5
5,026,207	+		PP_4430	0.52	-5.0
5,026,207	+		PP_4430	0.52	+0.2
5,026,208	-				-1.4
5,026,208	-		PP_4430	0.52	-0.2
5,026,214	-		PP_4430	0.53	-0.6
5,026,214	-		PP_4430	0.53	-5.1
5,026,267	+		PP_4430	0.58	+0.5
5,026,268	-		PP_4430	0.59	+0.3
5,026,268	-		PP_4430	0.59	-1.2
5,026,413	+		PP_4430	0.73	-1.5
5,026,414	-		PP_4430	0.73	+1.2
5,026,414	-		PP_4430	0.73	+0.7
5,026,414	-		PP_4430	0.73	+3.0
5,026,498	-		PP_4430	0.82	-0.2
5,026,498	-		PP_4430	0.82	-1.3
5,026,501	+		PP_4430	0.82	-1.4
5,026,501	+		PP_4430	0.82	+0.2
5,026,501	+		PP_4430	0.82	-0.4
5,026,501	+		PP_4430	0.82	-0.7
5,026,501	+		PP_4430	0.82	+0.1
5,026,502	-		PP_4430	0.82	+0.2
5,026,502	-		PP_4430	0.82	-0.7
5,026,502	-		PP_4430	0.82	-2.1
5,026,502	-		PP_4430	0.82	-0.3
5,026,502	-		PP_4430	0.82	-3.9
5,026,502	-		PP_4430	0.82	-2.5
5,026,502	-		PP_4430	0.82	+0.2
5,026,537	+		PP_4430	0.86	+1.1
5,026,538	-		PP_4430	0.86	-2.2
5,026,538	-		PP_4430	0.86	-0.6
5,026,538	-		PP_4430	0.86	+3.0
5,026,538	-		PP_4430	0.86	+2.8
5,026,541	+		PP_4430	0.86	-1.6
5,026,541	+		PP_4430	0.86	-0.0
5,026,542	-		PP_4430	0.86	+0.7
5,026,557	-		PP_4430	0.88	+0.5
5,026,677	+				-0.9
5,026,677	+				+0.3
5,026,678	-				+1.4
5,026,678	-				-0.5
5,026,678	-				+1.2
5,026,678	-				+1.7
5,026,738	-				-0.1
5,026,748	-				-1.3
5,026,756	+				-1.6
5,026,756	+				-1.6
5,026,757	-				+1.2
5,026,765	-				+0.2
5,026,871	+		PP_4431	0.18	+1.3
5,026,871	+		PP_4431	0.18	-0.6
5,026,871	+		PP_4431	0.18	-0.8
5,026,872	-		PP_4431	0.18	-1.8
5,026,935	+		PP_4431	0.25	+1.4
5,026,941	+		PP_4431	0.25	-0.6
5,026,941	+		PP_4431	0.25	+1.9
5,027,004	+		PP_4431	0.32	-2.8
5,027,004	+		PP_4431	0.32	-1.0
5,027,004	+		PP_4431	0.32	-1.4
5,027,018	+		PP_4431	0.33	-1.1
5,027,018	+		PP_4431	0.33	-1.1
5,027,018	+		PP_4431	0.33	+0.2
5,027,019	-		PP_4431	0.33	-0.2
5,027,159	-		PP_4431	0.47	-2.1
5,027,176	-		PP_4431	0.49	-1.8
5,027,183	-		PP_4431	0.50	-0.1
5,027,220	+		PP_4431	0.53	+0.3
5,027,220	+		PP_4431	0.53	+1.9
5,027,221	-		PP_4431	0.53	-0.3
5,027,232	-		PP_4431	0.54	-0.4
5,027,232	-		PP_4431	0.54	+0.3
5,027,326	-		PP_4431	0.64	+0.8
5,027,356	+		PP_4431	0.67	-1.3
5,027,365	+		PP_4431	0.68	-1.1
5,027,366	-		PP_4431	0.68	-0.2
5,027,409	+		PP_4431	0.72	-0.8
5,027,409	+		PP_4431	0.72	-0.6
5,027,409	+		PP_4431	0.72	-1.2
5,027,409	+		PP_4431	0.72	-0.4
5,027,409	+		PP_4431	0.72	-0.8
5,027,412	+		PP_4431	0.73	+2.0
5,027,412	+		PP_4431	0.73	-2.8
5,027,412	+		PP_4431	0.73	-3.2
5,027,413	-		PP_4431	0.73	+0.5
5,027,413	-		PP_4431	0.73	+0.8
5,027,429	+		PP_4431	0.74	-0.7
5,027,429	+		PP_4431	0.74	-2.1
5,027,430	-		PP_4431	0.74	-1.5
5,027,430	-		PP_4431	0.74	-0.1
5,027,430	-		PP_4431	0.74	+0.1
5,027,430	-		PP_4431	0.74	+0.3
5,027,430	-		PP_4431	0.74	-1.6
5,027,577	+		PP_4431	0.89	+3.0
5,027,577	+		PP_4431	0.89	-0.8
5,027,577	+		PP_4431	0.89	-0.1
5,027,672	+				+0.1
5,027,673	-				+0.1
5,027,701	+				-0.8
5,027,701	+				+5.9
5,027,702	-				+1.9
5,027,702	-				-0.9
5,027,709	+				+0.2
5,027,709	+				+0.4
5,027,762	+				+1.1
5,027,763	-				-1.6
5,027,775	+				-1.8
5,027,816	+				-2.2
5,027,816	+				-0.0
5,027,817	-				+0.2
5,027,817	-				+1.8
5,027,875	-		PP_4432	0.12	+0.3
5,027,892	+		PP_4432	0.13	-1.6
5,027,892	+		PP_4432	0.13	-1.0
5,027,908	+		PP_4432	0.15	+0.4
5,027,940	+		PP_4432	0.17	-1.8
5,027,940	+		PP_4432	0.17	-0.3
5,027,941	-		PP_4432	0.17	-0.7
5,027,975	+		PP_4432	0.20	-1.8
5,027,975	+		PP_4432	0.20	+0.1
5,027,975	+		PP_4432	0.20	+2.2
5,027,976	-		PP_4432	0.20	+1.6
5,027,976	-		PP_4432	0.20	+0.4
5,027,976	-		PP_4432	0.20	+2.8
5,027,976	-		PP_4432	0.20	+3.9
5,027,976	-		PP_4432	0.20	-0.6
5,027,976	-				+0.2
5,027,976	-		PP_4432	0.20	-0.4
5,028,017	+		PP_4432	0.24	+0.2
5,028,018	-		PP_4432	0.24	+0.7
5,028,018	-		PP_4432	0.24	-1.8
5,028,021	+		PP_4432	0.24	+0.5
5,028,021	+		PP_4432	0.24	+1.7
5,028,021	+				-0.4
5,028,021	+		PP_4432	0.24	+1.6
5,028,021	+		PP_4432	0.24	-0.2
5,028,021	+		PP_4432	0.24	+0.2
5,028,021	+		PP_4432	0.24	+0.7
5,028,021	+		PP_4432	0.24	-0.1
5,028,022	-		PP_4432	0.24	+0.2
5,028,022	-		PP_4432	0.24	-0.0
5,028,054	+		PP_4432	0.27	+0.3
5,028,054	+		PP_4432	0.27	-2.0
5,028,055	-		PP_4432	0.27	+1.2
5,028,055	-		PP_4432	0.27	-3.0
5,028,055	-		PP_4432	0.27	+0.1
5,028,101	+		PP_4432	0.31	-1.4
5,028,123	+		PP_4432	0.33	+0.5
5,028,123	+		PP_4432	0.33	+0.9
5,028,123	+		PP_4432	0.33	-0.0
5,028,123	+		PP_4432	0.33	+1.7
5,028,124	-		PP_4432	0.33	+0.2
5,028,124	-		PP_4432	0.33	+0.5
5,028,126	+		PP_4432	0.33	+0.8
5,028,127	-		PP_4432	0.33	-0.8
5,028,127	-		PP_4432	0.33	+0.2
5,028,144	+		PP_4432	0.35	+2.5
5,028,144	+		PP_4432	0.35	+1.1
5,028,144	+		PP_4432	0.35	-0.0
5,028,144	+		PP_4432	0.35	-4.4
5,028,145	-		PP_4432	0.35	+0.5
5,028,145	-		PP_4432	0.35	+0.6
5,028,145	-		PP_4432	0.35	-0.6
5,028,145	-		PP_4432	0.35	+1.0
5,028,243	+		PP_4432	0.43	-0.4
5,028,244	-		PP_4432	0.43	-1.1
5,028,342	+		PP_4432	0.51	-0.6
5,028,342	+		PP_4432	0.51	+3.0
5,028,342	+				+0.7
5,028,342	+		PP_4432	0.51	+2.2
5,028,342	+		PP_4432	0.51	-0.8
5,028,342	+		PP_4432	0.51	+1.2
5,028,342	+		PP_4432	0.51	-0.2
5,028,342	+		PP_4432	0.51	+0.2
5,028,342	+		PP_4432	0.51	-1.3
5,028,342	+		PP_4432	0.51	-3.4
5,028,343	-		PP_4432	0.51	+0.2
5,028,343	-		PP_4432	0.51	+2.0
5,028,343	-		PP_4432	0.51	+2.2
5,028,343	-		PP_4432	0.51	+0.0
5,028,343	-		PP_4432	0.51	-2.2
5,028,343	-		PP_4432	0.51	+1.8
5,028,343	-		PP_4432	0.51	-0.5
5,028,373	-		PP_4432	0.54	-2.9
5,028,373	-				-1.8
5,028,384	+		PP_4432	0.55	-2.2
5,028,425	+		PP_4432	0.58	-1.1
5,028,501	+		PP_4432	0.64	+0.1
5,028,502	-		PP_4432	0.65	-1.6
5,028,502	-		PP_4432	0.65	-0.1
5,028,502	-		PP_4432	0.65	+0.5
5,028,502	-		PP_4432	0.65	+0.5
5,028,502	-		PP_4432	0.65	-0.5
5,028,538	-		PP_4432	0.68	+0.2
5,028,641	+		PP_4432	0.76	-0.4