Strain Fitness in Pseudomonas putida KT2440 around PP_4111

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
4,644,482	+		PP_4109	0.31	-1.1
4,644,483	-		PP_4109	0.31	-0.9
4,644,483	-		PP_4109	0.31	-2.6
4,644,671	+				+1.9
4,644,671	+				+0.4
4,644,672	-				+0.6
4,644,672	-				+0.5
4,644,678	-				+0.3
4,644,678	-				+1.2
4,644,712	+				-0.8
4,644,712	+				+0.6
4,644,712	+				-0.2
4,644,712	+				-2.0
4,644,712	+				+0.0
4,644,712	+				+2.2
4,644,712	+				+0.4
4,644,713	-				+0.5
4,644,713	-				-0.7
4,644,713	-				-0.9
4,644,713	-				-2.8
4,644,714	+				-1.2
4,644,714	+				+0.6
4,644,715	-				+1.6
4,644,715	-				+1.2
4,644,730	+				+0.1
4,644,731	-				-0.5
4,644,731	-				+0.0
4,644,731	-				-2.1
4,644,895	-				-0.2
4,645,070	+		PP_5658	0.39	-0.6
4,645,071	-		PP_5658	0.40	-2.0
4,645,071	-		PP_5658	0.40	-1.4
4,645,093	+		PP_5658	0.44	+2.8
4,645,399	-				+0.0
4,645,427	+				+0.4
4,645,428	-				+2.3
4,645,428	-				+0.2
4,645,463	+				+0.0
4,645,464	-				-1.0
4,645,471	+				+0.8
4,645,471	+				-1.2
4,645,532	+				-3.6
4,645,532	+				+0.1
4,645,532	+				+1.8
4,645,533	-				+0.0
4,645,682	+		PP_4111	0.12	-0.4
4,645,682	+		PP_4111	0.12	+0.0
4,645,683	-		PP_4111	0.12	-1.5
4,645,835	+		PP_4111	0.19	-3.1
4,645,835	+		PP_4111	0.19	-0.3
4,645,835	+		PP_4111	0.19	-2.5
4,645,835	+		PP_4111	0.19	-2.6
4,645,836	-		PP_4111	0.19	+0.0
4,645,836	-		PP_4111	0.19	-0.1
4,645,836	-		PP_4111	0.19	-0.2
4,645,856	+		PP_4111	0.20	-0.3
4,645,856	+		PP_4111	0.20	+0.4
4,645,857	-		PP_4111	0.20	+1.0
4,646,012	+		PP_4111	0.27	-4.4
4,646,013	-		PP_4111	0.27	+0.5
4,646,013	-		PP_4111	0.27	+3.9
4,646,530	-		PP_4111	0.52	-0.1
4,646,697	+		PP_4111	0.60	+0.8
4,647,074	+		PP_4111	0.78	-0.6
4,647,074	+		PP_4111	0.78	+1.8
4,647,074	+		PP_4111	0.78	-0.6
4,647,075	-		PP_4111	0.78	-0.2
4,647,075	-		PP_4111	0.78	+0.1
4,647,176	+		PP_4111	0.82	-1.9
4,647,206	+		PP_4111	0.84	-0.6
4,647,206	+		PP_4111	0.84	+1.6
4,647,206	+		PP_4111	0.84	-3.1
4,647,207	-		PP_4111	0.84	-3.2
4,647,309	-		PP_4111	0.89	-2.0
4,647,390	+				+0.0
4,647,390	+				+0.4
4,647,390	+				+1.8
4,647,391	-				-2.6
4,647,391	-				+1.7
4,647,391	-				+0.1
4,647,489	-				+1.3
4,647,590	+				+1.5
4,647,631	-				-2.0
4,647,763	+				-0.3
4,647,802	+				-2.8
4,647,803	-				+0.0
4,647,920	-		PP_4112	0.17	-0.2
4,647,959	-		PP_4112	0.19	-1.8
4,648,007	+		PP_4112	0.23	+2.0
4,648,176	-		PP_4112	0.34	+0.0
4,648,176	-		PP_4112	0.34	-1.4
4,648,453	+		PP_4112	0.53	+2.1