Strain Fitness in Pseudomonas putida KT2440 around PP_4039

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
4,551,098	-		PP_4038	0.37	-0.5
4,551,130	+		PP_4038	0.39	+1.3
4,551,131	-		PP_4038	0.39	+2.0
4,551,507	+		PP_4038	0.69	-2.8
4,551,754	+		PP_4038	0.88	-1.2
4,551,754	+		PP_4038	0.88	+0.4
4,551,754	+		PP_4038	0.88	-2.5
4,551,755	-		PP_4038	0.88	-1.4
4,551,755	-		PP_4038	0.88	+0.4
4,551,755	-		PP_4038	0.88	+0.2
4,551,779	+				-0.7
4,551,780	-				-0.6
4,551,780	-				+3.1
4,551,786	+				-0.8
4,551,787	-				-1.5
4,552,003	-				+0.4
4,552,211	+		PP_4039	0.24	+0.0
4,552,212	-		PP_4039	0.24	+0.5
4,552,212	-		PP_4039	0.24	-0.8
4,552,212	-		PP_4039	0.24	+0.0
4,552,212	-		PP_4039	0.24	+2.6
4,552,236	+		PP_4039	0.29	+0.8
4,552,236	+		PP_4039	0.29	+0.0
4,552,236	+		PP_4039	0.29	-4.1
4,552,236	+		PP_4039	0.29	+0.0
4,552,236	+		PP_4039	0.29	-1.2
4,552,236	+		PP_4039	0.29	-3.5
4,552,236	+		PP_4039	0.29	+3.0
4,552,237	-		PP_4039	0.29	+0.5
4,552,237	-		PP_4039	0.29	+0.8
4,552,238	+		PP_4039	0.29	+0.5
4,552,238	+		PP_4039	0.29	-0.2
4,552,238	+		PP_4039	0.29	+0.8
4,552,238	+		PP_4039	0.29	+1.0
4,552,238	+		PP_4039	0.29	+0.0
4,552,238	+		PP_4039	0.29	+1.1
4,552,238	+				+0.6
4,552,238	+		PP_4039	0.29	-0.1
4,552,239	-		PP_4039	0.29	+0.9
4,552,239	-		PP_4039	0.29	-3.1
4,552,239	-		PP_4039	0.29	-3.6
4,552,239	-		PP_4039	0.29	+0.0
4,552,269	+		PP_4039	0.35	-0.2
4,552,269	+		PP_4039	0.35	+1.3
4,552,439	+		PP_4039	0.67	+0.8
4,552,556	+				+2.6
4,552,556	+				+0.0
4,552,557	-				-0.9
4,552,557	-				+0.7
4,552,557	-				-1.2
4,552,557	-				-0.3
4,552,557	-				+1.3
4,552,560	-				-0.8
4,552,560	-				+0.6
4,552,670	+				-1.0
4,552,854	+		PP_4040	0.41	-0.7
4,552,855	-		PP_4040	0.42	-0.6
4,552,938	+		PP_4040	0.65	-0.2
4,552,939	-		PP_4040	0.65	-0.4
4,552,973	+		PP_4040	0.75	+0.3
4,552,974	-		PP_4040	0.75	+0.5
4,552,983	+		PP_4040	0.78	-2.1
4,552,983	+		PP_4040	0.78	-0.7
4,552,983	+		PP_4040	0.78	-0.2
4,552,983	+		PP_4040	0.78	+2.6
4,552,984	-		PP_4040	0.78	+0.0
4,552,984	-		PP_4040	0.78	-0.8
4,552,984	-		PP_4040	0.78	-2.3
4,552,984	-		PP_4040	0.78	+2.9
4,552,984	-		PP_4040	0.78	-0.6
4,553,064	+				+0.3
4,553,064	+				+0.3
4,553,064	+				-0.7
4,553,064	+				+0.4
4,553,064	+				+0.1
4,553,064	+				-2.3
4,553,064	+				-0.1
4,553,064	+				-2.3
4,553,064	+				-2.0
4,553,064	+				-2.0
4,553,064	+				+1.4
4,553,064	+				-4.0
4,553,064	+				+2.3
4,553,065	-				-2.0
4,553,065	-				-2.5
4,553,065	-				+0.2
4,553,065	-				+1.0
4,553,091	+				+1.5
4,553,091	+				+1.0
4,553,091	+				+0.2
4,553,092	-				-0.4
4,553,096	+				+1.0
4,553,201	+				+4.7
4,553,201	+				-0.7
4,553,202	-				+1.4
4,553,256	+				-1.8
4,553,256	+				-1.5
4,553,256	+				+1.3
4,553,256	+				-0.3
4,553,308	-				-0.1
4,553,308	-				+0.0
4,553,346	+		PP_4041	0.12	+0.0
4,553,347	-		PP_4041	0.12	+0.0
4,553,347	-		PP_4041	0.12	+1.3
4,553,427	+		PP_4041	0.17	+1.7
4,553,562	+		PP_4041	0.24	+0.0
4,553,562	+		PP_4041	0.24	-0.1
4,553,563	-		PP_4041	0.24	-0.7