Strain Fitness in Pseudomonas putida KT2440 around PP_3942

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
4,443,920	+				+2.5
4,443,920	+				+0.1
4,444,059	+				-0.6
4,444,059	+				+0.2
4,444,059	+				+0.3
4,444,167	-				+0.9
4,444,248	+				-1.3
4,444,248	+				-4.2
4,444,248	+				+0.7
4,444,249	-				+1.4
4,444,249	-				+3.8
4,444,249	-				-4.8
4,444,406	-		PP_3941	0.34	+0.4
4,444,464	+		PP_3941	0.43	+0.7
4,444,618	+		PP_3941	0.67	+1.3
4,444,618	+		PP_3941	0.67	+0.6
4,444,618	+		PP_3941	0.67	-1.0
4,444,618	+		PP_3941	0.67	-0.3
4,444,633	+		PP_3941	0.69	-2.2
4,444,633	+		PP_3941	0.69	-2.2
4,444,634	-		PP_3941	0.69	-5.5
4,444,634	-		PP_3941	0.69	+4.3
4,444,702	-		PP_3941	0.80	+2.7
4,444,725	+		PP_3941	0.83	-1.9
4,444,801	-				-0.5
4,444,801	-				-1.4
4,444,920	+				-1.0
4,444,920	+				+1.0
4,444,920	+				+0.4
4,444,928	-		PP_3942	0.11	-2.4
4,445,157	+		PP_3942	0.41	-0.7
4,445,157	+		PP_3942	0.41	+1.7
4,445,157	+		PP_3942	0.41	-0.1
4,445,158	-		PP_3942	0.41	-2.5
4,445,158	-		PP_3942	0.41	-0.5
4,445,190	+		PP_3942	0.46	-0.6
4,445,190	+		PP_3942	0.46	-2.7
4,445,190	+		PP_3942	0.46	-0.9
4,445,191	-		PP_3942	0.46	-2.3
4,445,368	-		PP_3942	0.69	+0.1
4,445,368	-		PP_3942	0.69	-0.8
4,445,587	-				+0.4
4,445,588	+				+1.8
4,445,588	+				+1.3
4,445,588	+				-5.3
4,445,588	+				-0.4
4,445,704	+		PP_3943	0.11	-3.1
4,445,704	+		PP_3943	0.11	+0.1
4,445,819	-		PP_3943	0.26	+0.1
4,445,819	-		PP_3943	0.26	+1.1
4,445,819	-		PP_3943	0.26	+0.4
4,445,876	-		PP_3943	0.33	+2.2
4,445,992	+		PP_3943	0.47	+1.7
4,445,992	+		PP_3943	0.47	-0.3
4,445,993	-		PP_3943	0.47	-0.7
4,446,137	-		PP_3943	0.65	+0.4
4,446,140	+		PP_3943	0.65	-0.0
4,446,140	+		PP_3943	0.65	+2.2
4,446,174	-		PP_3943	0.70	+1.8
4,446,199	+		PP_3943	0.73	-0.6
4,446,200	-		PP_3943	0.73	-0.2
4,446,253	+		PP_3943	0.79	+1.1
4,446,253	+				-1.5
4,446,253	+		PP_3943	0.79	+0.0
4,446,253	+		PP_3943	0.79	+0.2
4,446,253	+		PP_3943	0.79	-1.1
4,446,254	-		PP_3943	0.79	-2.4
4,446,254	-		PP_3943	0.79	+0.8
4,446,254	-		PP_3943	0.79	+0.1
4,446,254	-		PP_3943	0.79	+0.5
4,446,254	-		PP_3943	0.79	-0.1
4,446,254	-		PP_3943	0.79	+0.8
4,446,254	-		PP_3943	0.79	-2.1
4,446,254	-		PP_3943	0.79	+2.4
4,446,266	-		PP_3943	0.81	+0.5
4,446,364	+				-0.7
4,446,364	+				+1.3
4,446,364	+				+0.4
4,446,365	-				+0.1
4,446,365	-				+0.8
4,446,395	+				-1.5
4,446,450	+				-1.2
4,446,450	+				+0.1
4,446,450	+				-0.2
4,446,450	+				-0.1
4,446,451	-				+0.9
4,446,492	+				+1.4
4,446,493	-				-3.8
4,446,493	-				-1.6
4,446,558	+		PP_3944	0.12	+0.1
4,446,559	-		PP_3944	0.12	-0.4