Strain Fitness in Pseudomonas putida KT2440 around PP_3784

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
4,310,287	+				-3.5
4,310,352	+				-4.0
4,310,352	+				-0.2
4,310,353	-				+1.2
4,310,353	-				-0.6
4,310,353	-				-3.4
4,310,356	+				-0.4
4,310,356	+				+0.6
4,310,356	+				+0.1
4,310,357	-				+0.1
4,310,373	+				-0.0
4,310,374	-				-0.7
4,310,374	-				+0.2
4,310,484	+		PP_3783	0.21	-0.9
4,310,484	+		PP_3783	0.21	-1.6
4,310,743	+		PP_3783	0.49	+0.4
4,310,743	+		PP_3783	0.49	-0.7
4,310,799	+		PP_3783	0.54	-3.3
4,310,799	+		PP_3783	0.54	-0.1
4,310,800	-		PP_3783	0.55	-1.0
4,310,874	+		PP_3783	0.62	-0.9
4,310,874	+		PP_3783	0.62	+1.1
4,310,874	+		PP_3783	0.62	+0.2
4,310,874	+		PP_3783	0.62	+1.6
4,310,875	-		PP_3783	0.63	-0.9
4,310,875	-		PP_3783	0.63	-2.5
4,310,875	-		PP_3783	0.63	-1.3
4,310,875	-		PP_3783	0.63	-3.6
4,310,875	-		PP_3783	0.63	-2.4
4,310,875	-		PP_3783	0.63	-0.7
4,310,875	-		PP_3783	0.63	-0.8
4,310,881	-		PP_3783	0.63	+0.1
4,310,903	-		PP_3783	0.66	-4.2
4,310,940	+		PP_3783	0.70	+0.8
4,310,940	+		PP_3783	0.70	+4.4
4,310,941	-		PP_3783	0.70	+1.2
4,310,941	-		PP_3783	0.70	+0.3
4,310,941	-		PP_3783	0.70	+1.1
4,310,941	-		PP_3783	0.70	-0.9
4,311,039	+		PP_3783	0.80	+1.2
4,311,039	+		PP_3783	0.80	+0.5
4,311,052	-		PP_3783	0.82	-0.4
4,311,052	-		PP_3783	0.82	-1.0
4,311,129	+		PP_3783	0.90	+1.1
4,311,129	+		PP_3783	0.90	+0.2
4,311,130	-		PP_3783	0.90	+0.1
4,311,130	-		PP_3783	0.90	+1.2
4,311,364	+				+0.3
4,311,537	+		PP_3784	0.22	+0.1
4,311,538	-		PP_3784	0.22	-1.1
4,311,589	-		PP_3784	0.27	-0.4
4,311,589	-		PP_3784	0.27	+0.1
4,311,642	+		PP_3784	0.31	-0.1
4,311,642	+		PP_3784	0.31	-0.6
4,311,642	+		PP_3784	0.31	+0.5
4,311,643	-				+0.5
4,311,719	+		PP_3784	0.38	-0.2
4,311,785	+		PP_3784	0.44	+0.1
4,311,785	+		PP_3784	0.44	+0.7
4,311,785	+		PP_3784	0.44	-1.7
4,311,786	-		PP_3784	0.44	-3.6
4,311,786	-		PP_3784	0.44	-2.6
4,311,786	-		PP_3784	0.44	-3.4
4,311,786	-		PP_3784	0.44	-0.3
4,311,827	+		PP_3784	0.47	-0.0
4,311,922	-		PP_3784	0.56	-4.8
4,311,925	+		PP_3784	0.56	-0.1
4,311,925	+		PP_3784	0.56	-1.7
4,311,925	+		PP_3784	0.56	+0.5
4,311,926	-		PP_3784	0.56	-1.1
4,311,926	-		PP_3784	0.56	-0.7
4,312,034	-		PP_3784	0.65	-1.8
4,312,126	+		PP_3784	0.73	+1.0
4,312,127	-		PP_3784	0.73	-3.3
4,312,195	-		PP_3784	0.79	-1.1
4,312,274	+		PP_3784	0.86	+3.0
4,312,283	+		PP_3784	0.87	-1.6
4,312,283	+		PP_3784	0.87	-1.6
4,312,284	-		PP_3784	0.87	+0.1
4,312,284	-		PP_3784	0.87	-1.9
4,312,420	+				-0.8
4,312,430	+				+0.5
4,312,430	+				+1.2
4,312,430	+				+0.1
4,312,555	+				+0.1
4,312,555	+				+1.1
4,312,555	+				-2.9
4,312,555	+				+0.4
4,312,556	-				-1.3
4,312,556	-				+0.1
4,312,558	+				-1.1
4,312,558	+				-0.1
4,312,559	-				+0.1
4,312,559	-				-1.7
4,312,559	-				-1.0
4,312,559	-				+1.1
4,312,559	-				-1.3
4,312,559	-				-3.3
4,312,559	-				-0.5
4,312,601	+		PP_3785	0.12	+0.9
4,312,602	-		PP_3785	0.12	-3.6
4,312,611	+		PP_3785	0.13	+0.1
4,312,611	+		PP_3785	0.13	-0.3
4,312,612	-		PP_3785	0.13	-2.6
4,312,612	-		PP_3785	0.13	-3.5
4,312,615	+		PP_3785	0.13	+0.3
4,312,615	+		PP_3785	0.13	-2.7
4,312,615	+		PP_3785	0.13	-1.2
4,312,616	-		PP_3785	0.13	-1.5
4,312,616	-		PP_3785	0.13	-2.7
4,312,636	+		PP_3785	0.15	-3.6
4,312,637	-		PP_3785	0.15	-4.0
4,312,640	+		PP_3785	0.15	-0.8
4,312,640	+		PP_3785	0.15	+3.2
4,312,641	-		PP_3785	0.15	-2.4
4,312,672	+		PP_3785	0.17	-1.5
4,312,703	-		PP_3785	0.20	+0.1
4,312,713	-		PP_3785	0.21	+0.1
4,312,713	-		PP_3785	0.21	-4.5
4,312,754	+		PP_3785	0.24	+1.3
4,312,755	-		PP_3785	0.24	-2.9
4,312,773	+		PP_3785	0.25	+1.4
4,312,773	+		PP_3785	0.25	-0.6
4,312,773	+		PP_3785	0.25	-4.3
4,312,773	+		PP_3785	0.25	-0.0
4,312,773	+		PP_3785	0.25	+0.5
4,312,774	-		PP_3785	0.25	+0.1
4,312,774	-		PP_3785	0.25	-3.7
4,312,774	-		PP_3785	0.25	-0.6
4,312,774	-		PP_3785	0.25	-3.3
4,312,774	-		PP_3785	0.25	-0.4
4,312,774	-		PP_3785	0.25	+0.7
4,312,774	-		PP_3785	0.25	-2.5
4,312,774	-		PP_3785	0.25	-4.2
4,312,777	+		PP_3785	0.25	+3.2
4,312,777	+		PP_3785	0.25	-2.9
4,312,777	+		PP_3785	0.25	+0.1
4,312,777	+		PP_3785	0.25	+2.2
4,312,778	-		PP_3785	0.25	-0.6
4,312,778	-		PP_3785	0.25	-1.5
4,312,820	+		PP_3785	0.28	-0.9
4,312,820	+		PP_3785	0.28	+2.2
4,312,821	-		PP_3785	0.29	-1.6
4,312,891	+		PP_3785	0.34	-2.7
4,312,892	-		PP_3785	0.34	+0.3
4,312,897	+		PP_3785	0.34	-2.5
4,312,897	+		PP_3785	0.34	-2.1
4,312,898	-		PP_3785	0.34	+1.0
4,312,898	-		PP_3785	0.34	+0.7
4,312,969	+		PP_3785	0.40	-1.9
4,312,980	+				+0.1
4,313,065	+		PP_3785	0.47	-0.8
4,313,191	+		PP_3785	0.56	+0.1
4,313,192	-		PP_3785	0.56	-4.3
4,313,192	-		PP_3785	0.56	+0.1
4,313,195	+		PP_3785	0.56	+1.2
4,313,195	+		PP_3785	0.56	+0.6
4,313,195	+		PP_3785	0.56	+0.3
4,313,196	-		PP_3785	0.57	-3.5
4,313,257	-		PP_3785	0.61	-3.3
4,313,291	-		PP_3785	0.64	-1.6
4,313,291	-		PP_3785	0.64	-1.6
4,313,310	-		PP_3785	0.65	+0.3
4,313,333	+		PP_3785	0.67	+0.5
4,313,402	-		PP_3785	0.72	-0.2
4,313,402	-		PP_3785	0.72	-1.4
4,313,402	-		PP_3785	0.72	+0.7