Strain Fitness in Pseudomonas putida KT2440 around PP_3763

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
4,292,468	+				-0.0
4,292,468	+				+0.2
4,292,469	-				-0.1
4,292,532	+				+2.0
4,292,532	+				+2.6
4,292,604	-				-1.9
4,292,646	+				+0.2
4,292,668	+				+2.1
4,292,669	-				+1.1
4,292,679	-				+0.3
4,292,749	+				-0.8
4,292,749	+				+2.4
4,292,749	+				-0.4
4,292,750	-				+2.1
4,292,750	-				-0.9
4,292,750	-				-2.9
4,292,794	+				-0.2
4,292,803	+				-1.6
4,292,803	+				-0.4
4,292,804	-				-3.3
4,292,804	-				+0.4
4,292,868	+				+0.9
4,292,868	+				-0.5
4,292,869	-		PP_3762	0.10	+0.2
4,292,869	-		PP_3762	0.10	-2.6
4,292,906	+		PP_3762	0.21	+0.2
4,292,906	+		PP_3762	0.21	-0.0
4,292,949	+		PP_3762	0.33	-0.0
4,293,166	+				-3.5
4,293,166	+				-0.3
4,293,167	-				+1.6
4,293,210	-				+1.6
4,293,276	+				+1.1
4,293,276	+				-0.8
4,293,276	+				+0.3
4,293,276	+				+1.2
4,293,277	-				+0.3
4,293,277	-				-2.8
4,293,277	-				+0.7
4,293,277	-				-0.9
4,293,277	-				-1.1
4,293,277	-				+0.8
4,293,277	-				+0.1
4,293,280	+				+1.7
4,293,280	+				+2.4
4,293,281	-				-2.7
4,293,281	-				+1.1
4,293,299	-				+2.2
4,293,391	-		PP_3763	0.18	-3.1
4,293,402	+		PP_3763	0.20	+0.1
4,293,403	-		PP_3763	0.20	+0.1
4,293,403	-		PP_3763	0.20	+0.2
4,293,403	-		PP_3763	0.20	+0.1
4,293,403	-		PP_3763	0.20	+2.9
4,293,636	-		PP_3763	0.51	+1.4
4,293,636	-		PP_3763	0.51	+3.1
4,293,729	+		PP_3763	0.63	+0.6
4,293,774	+		PP_3763	0.69	+0.8
4,293,774	+		PP_3763	0.69	+0.9
4,293,825	+		PP_3763	0.76	-0.5
4,293,948	+				-2.3
4,293,948	+				-3.5
4,293,948	+				-0.0
4,293,948	+				-0.1
4,293,949	-				+0.1
4,293,949	-				+1.1
4,293,949	-				+2.1
4,294,052	+				-0.5
4,294,053	-				-2.8
4,294,053	-				-3.3
4,294,072	+				-1.5
4,294,073	-				-1.0
4,294,073	-				+0.2
4,294,073	-				+1.2
4,294,073	-				+0.1
4,294,073	-				-0.4
4,294,090	+				+3.2
4,294,090	+				-0.6
4,294,090	+				+4.5
4,294,091	-				+0.7
4,294,091	-				-0.2
4,294,138	+				+0.5
4,294,138	+				+1.2
4,294,138	+				-1.3
4,294,138	+				-1.3
4,294,139	-				+0.1
4,294,139	-				-0.2
4,294,139	-				-0.4
4,294,151	-				+2.8
4,294,161	-				+2.4
4,294,161	-				+0.6
4,294,170	+				+1.1
4,294,171	-				-0.8
4,294,171	-				+3.5
4,294,171	-				+0.1
4,294,208	-		PP_3764	0.11	+0.5
4,294,268	+		PP_3764	0.15	-0.4
4,294,268	+		PP_3764	0.15	+0.4
4,294,268	+		PP_3764	0.15	-1.4
4,294,283	+		PP_3764	0.16	-0.3
4,294,283	+		PP_3764	0.16	+0.2
4,294,284	-		PP_3764	0.16	-1.4
4,294,284	-		PP_3764	0.16	+0.7
4,294,284	-		PP_3764	0.16	+0.1
4,294,285	+		PP_3764	0.16	-0.6
4,294,333	+		PP_3764	0.20	+1.2
4,294,334	-		PP_3764	0.20	-1.2
4,294,334	-		PP_3764	0.20	+1.8
4,294,334	-		PP_3764	0.20	-0.9
4,294,334	-		PP_3764	0.20	-2.2
4,294,339	+		PP_3764	0.21	+0.5
4,294,340	-		PP_3764	0.21	+0.6
4,294,340	-		PP_3764	0.21	-0.9
4,294,393	+		PP_3764	0.25	+1.4
4,294,393	+		PP_3764	0.25	+2.0
4,294,393	+		PP_3764	0.25	-0.5
4,294,394	-		PP_3764	0.25	-0.3
4,294,406	-		PP_3764	0.26	+0.4
4,294,427	-		PP_3764	0.27	-0.9
4,294,447	+		PP_3764	0.29	+1.6
4,294,447	+		PP_3764	0.29	+0.1
4,294,447	+		PP_3764	0.29	+0.3
4,294,448	-		PP_3764	0.29	-0.5
4,294,492	+		PP_3764	0.32	+1.0
4,294,643	+		PP_3764	0.44	+1.2
4,294,643	+		PP_3764	0.44	+0.4
4,294,644	-		PP_3764	0.44	-2.3
4,294,644	-		PP_3764	0.44	-0.1
4,294,667	-		PP_3764	0.46	+0.5
4,294,696	+		PP_3764	0.48	-0.2
4,294,697	-		PP_3764	0.48	-0.4
4,294,745	-		PP_3764	0.52	-0.7
4,294,804	+		PP_3764	0.56	-2.8
4,294,804	+		PP_3764	0.56	-0.1
4,294,805	-		PP_3764	0.56	-0.1
4,294,903	+		PP_3764	0.64	-4.3
4,294,903	+		PP_3764	0.64	+0.4
4,294,904	-		PP_3764	0.64	-1.9
4,294,940	-		PP_3764	0.67	-3.3
4,294,940	-		PP_3764	0.67	+1.4
4,294,994	-		PP_3764	0.71	+1.1