Strain Fitness in Pseudomonas putida KT2440 around PP_3577

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
4,057,904	+		PP_3576	0.19	-0.8
4,058,047	+		PP_3576	0.34	+1.0
4,058,047	+		PP_3576	0.34	-1.2
4,058,047	+		PP_3576	0.34	+0.7
4,058,048	-		PP_3576	0.34	-0.8
4,058,048	-		PP_3576	0.34	+3.5
4,058,048	-		PP_3576	0.34	+4.0
4,058,702	-				+2.1
4,058,716	+				+0.3
4,058,717	-				-0.6
4,058,717	-				+0.4
4,058,717	-				+2.3
4,058,717	-				-0.7
4,058,926	+		PP_3577	0.50	-0.0
4,058,926	+		PP_3577	0.50	+1.3
4,058,926	+		PP_3577	0.50	-0.3
4,058,926	+		PP_3577	0.50	+2.8
4,058,927	-		PP_3577	0.50	+0.7
4,058,942	+		PP_3577	0.53	+2.1
4,058,942	+		PP_3577	0.53	+0.6
4,058,943	-		PP_3577	0.53	-3.4
4,058,992	+		PP_3577	0.63	+0.6
4,059,009	+		PP_3577	0.66	+0.4
4,059,054	-		PP_3577	0.75	+0.6
4,059,092	+		PP_3577	0.82	+1.2
4,059,093	-		PP_3577	0.82	-0.4
4,059,093	-		PP_3577	0.82	-0.7
4,059,137	-				+0.5
4,059,352	+				-0.9
4,059,352	+				-3.6
4,059,353	-				+0.4
4,059,353	-				-0.3
4,059,410	+				+0.4
4,059,410	+				-0.2
4,059,410	+				+1.6
4,059,411	-				+1.1
4,059,598	+		PP_3578	0.21	+2.8
4,059,599	-		PP_3578	0.21	-1.2
4,059,599	-		PP_3578	0.21	-0.3
4,059,796	+		PP_3578	0.33	-0.0
4,059,796	+		PP_3578	0.33	-0.1
4,059,796	+		PP_3578	0.33	+1.6
4,059,797	-		PP_3578	0.33	-0.7
4,059,797	-		PP_3578	0.33	-3.0
4,059,904	+		PP_3578	0.39	+1.8
4,059,904	+		PP_3578	0.39	+0.1
4,059,905	-		PP_3578	0.39	-0.0
4,059,925	+		PP_3578	0.41	+0.3
4,059,925	+				+0.4
4,059,926	-		PP_3578	0.41	-1.3
4,060,023	+		PP_3578	0.47	+1.8
4,060,023	+		PP_3578	0.47	+3.0
4,060,145	-		PP_3578	0.54	-0.4
4,060,169	-		PP_3578	0.55	-0.4
4,060,169	-		PP_3578	0.55	-1.7
4,060,173	+		PP_3578	0.56	+3.0
4,060,174	-		PP_3578	0.56	+0.3