Strain Fitness in Pseudomonas putida KT2440 around PP_3553

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
4,027,642	+		PP_3552	0.44	-0.0
4,027,642	+		PP_3552	0.44	-0.0
4,027,643	-		PP_3552	0.44	+0.1
4,027,643	-		PP_3552	0.44	-0.0
4,027,643	-		PP_3552	0.44	+0.3
4,027,926	+		PP_3552	0.64	-1.0
4,027,958	+		PP_3552	0.66	-0.6
4,027,958	+		PP_3552	0.66	+0.5
4,027,958	+		PP_3552	0.66	-0.9
4,027,958	+		PP_3552	0.66	+0.7
4,027,959	-		PP_3552	0.67	-1.0
4,027,959	-		PP_3552	0.67	-0.1
4,027,962	+		PP_3552	0.67	-0.3
4,027,962	+		PP_3552	0.67	-1.5
4,027,962	+		PP_3552	0.67	+1.0
4,027,962	+		PP_3552	0.67	-0.8
4,027,962	+		PP_3552	0.67	-0.3
4,027,962	+		PP_3552	0.67	+1.0
4,027,962	+		PP_3552	0.67	-2.6
4,027,962	+		PP_3552	0.67	+0.3
4,027,962	+		PP_3552	0.67	+0.8
4,027,962	+		PP_3552	0.67	+0.8
4,027,963	-		PP_3552	0.67	-1.1
4,027,963	-		PP_3552	0.67	-0.5
4,027,963	-		PP_3552	0.67	+0.3
4,027,963	-		PP_3552	0.67	+0.5
4,027,963	-		PP_3552	0.67	-0.3
4,027,963	-		PP_3552	0.67	+1.2
4,027,963	-		PP_3552	0.67	-0.3
4,027,963	-		PP_3552	0.67	-0.0
4,028,414	-				+3.7
4,028,414	-				-0.1
4,028,414	-				+0.9
4,028,433	-				-1.9
4,028,458	+				-0.0
4,028,463	+				-1.5
4,028,463	+				+1.0
4,028,463	+				+1.5
4,028,484	+				-2.4
4,028,484	+				+3.1
4,028,484	+				+4.3
4,028,485	-				-3.9
4,028,489	-				-0.3
4,028,560	+				-1.4
4,028,560	+				-0.3
4,028,561	-				+0.5
4,028,561	-				-0.8
4,028,561	-				-0.0
4,028,561	-				-0.4
4,028,609	+				+2.0
4,028,618	-				-1.3
4,028,618	-				-1.7
4,028,632	+				-0.8
4,028,632	+				+3.1
4,028,632	+				-0.1
4,028,633	-				-3.6
4,028,722	+				+2.8
4,028,722	+				+1.2
4,028,885	+		PP_3553	0.16	+0.7
4,028,911	-		PP_3553	0.18	+1.8
4,029,103	+		PP_3553	0.30	-0.5
4,029,104	-		PP_3553	0.30	+0.6
4,029,184	+		PP_3553	0.35	+0.1
4,029,184	+		PP_3553	0.35	+1.4
4,029,185	-		PP_3553	0.35	+0.6
4,029,185	-		PP_3553	0.35	+1.4
4,029,185	-		PP_3553	0.35	-0.7
4,029,223	+		PP_3553	0.37	+1.4
4,029,224	-		PP_3553	0.37	-2.9
4,029,224	-		PP_3553	0.37	+0.3
4,029,241	+		PP_3553	0.38	-3.2
4,029,241	+		PP_3553	0.38	+1.2
4,029,296	-		PP_3553	0.41	-0.6
4,029,337	+		PP_3553	0.44	-2.0
4,029,337	+				-0.0
4,029,338	-		PP_3553	0.44	+1.2
4,029,598	+		PP_3553	0.60	-2.1
4,029,598	+		PP_3553	0.60	-1.6
4,029,599	-		PP_3553	0.60	-4.8
4,029,599	-		PP_3553	0.60	+0.3
4,029,777	+		PP_3553	0.71	+0.6
4,029,778	-		PP_3553	0.71	-0.8
4,029,824	-		PP_3553	0.74	+1.1
4,029,910	+		PP_3553	0.79	+0.9
4,029,911	-		PP_3553	0.79	+1.7
4,029,912	+		PP_3553	0.79	+0.2
4,029,994	+		PP_3553	0.84	-2.0
4,030,213	+				+0.4
4,030,213	+				-0.3
4,030,214	-				+0.1
4,030,214	-				+0.2
4,030,318	+				+0.8
4,030,318	+				+1.6
4,030,318	+				+0.9
4,030,322	-				-0.2
4,030,322	-				-0.2
4,030,322	-				+2.5
4,030,347	+				+2.0
4,030,347	+				+0.7
4,030,347	+				-0.7
4,030,348	-				+1.1
4,030,692	+		PP_3554	0.20	-2.7
4,030,788	+		PP_3554	0.25	+0.6
4,030,788	+		PP_3554	0.25	-1.9
4,030,789	-		PP_3554	0.25	+2.4
4,030,804	-		PP_3554	0.26	+0.1
4,031,020	+		PP_3554	0.39	+0.5
4,031,020	+		PP_3554	0.39	-0.2
4,031,021	-		PP_3554	0.39	+1.0
4,031,220	+		PP_3554	0.50	+0.5
4,031,221	-		PP_3554	0.50	-0.8
4,031,221	-		PP_3554	0.50	+1.7
4,031,221	-		PP_3554	0.50	+1.8
4,031,221	-		PP_3554	0.50	-1.4
4,031,221	-		PP_3554	0.50	+0.3
4,031,242	+		PP_3554	0.51	-3.2
4,031,242	+		PP_3554	0.51	+1.2
4,031,242	+		PP_3554	0.51	-1.2
4,031,243	-		PP_3554	0.51	+0.7
4,031,243	-		PP_3554	0.51	+2.0