Strain Fitness in Pseudomonas putida KT2440 around PP_3469

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
3,935,327	-				-2.0
3,935,327	-				+0.1
3,935,327	-				-0.1
3,935,397	+				-0.1
3,935,398	-				+4.0
3,935,418	-				-0.3
3,935,504	-				-0.1
3,935,536	-				+0.4
3,935,607	-				+4.2
3,935,678	-				+0.6
3,935,975	+				-0.1
3,936,174	-				-0.3
3,936,207	-				-1.4
3,936,235	-				+1.1
3,936,245	+				+1.9
3,936,245	+				+3.5
3,936,254	-				+1.1
3,936,254	-				-0.1
3,936,315	+		PP_3469	0.10	+1.8
3,936,403	+		PP_3469	0.19	+0.8
3,936,431	+		PP_3469	0.22	+0.2
3,936,431	+		PP_3469	0.22	-3.1
3,936,431	+		PP_3469	0.22	-0.8
3,936,441	-		PP_3469	0.23	+0.5
3,936,507	+		PP_3469	0.30	+2.4
3,936,549	-		PP_3469	0.34	+1.0
3,936,549	-		PP_3469	0.34	+2.7
3,936,550	+		PP_3469	0.35	+0.8
3,936,584	+		PP_3469	0.38	-0.1
3,936,588	+		PP_3469	0.38	-1.3
3,936,799	+		PP_3469	0.60	+1.4
3,937,047	+		PP_3469	0.86	-1.4
3,937,102	-				-3.8
3,937,203	-				-0.7
3,937,358	-				-0.5
3,937,478	+				-2.6
3,937,478	+				-1.3
3,937,479	-				+0.4
3,937,479	-				-2.8
3,937,509	+				+0.0
3,937,706	+				+2.8
3,937,707	-				+0.5
3,937,707	-				-0.3
3,937,814	-				-0.2
3,937,908	+				-1.2
3,937,961	+				-0.3
3,938,009	-				-0.1
3,938,160	-		PP_3471	0.20	-0.1