Strain Fitness in Pseudomonas putida KT2440 around PP_3422

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
3,873,412	+		PP_3421	0.50	+0.3
3,873,474	+		PP_3421	0.54	+1.2
3,873,475	-		PP_3421	0.54	+0.8
3,873,475	-		PP_3421	0.54	+4.7
3,873,475	-		PP_3421	0.54	+0.6
3,873,475	-		PP_3421	0.54	-0.5
3,873,499	+		PP_3421	0.56	+1.3
3,873,553	+		PP_3421	0.60	+0.3
3,873,554	-		PP_3421	0.60	-0.8
3,873,649	+		PP_3421	0.66	+1.4
3,873,650	-		PP_3421	0.66	+4.3
3,873,742	+		PP_3421	0.73	+1.2
3,873,743	-		PP_3421	0.73	+2.7
3,873,743	-		PP_3421	0.73	-0.6
3,873,746	+		PP_3421	0.73	-3.6
3,873,762	-		PP_3421	0.74	-2.8
3,873,780	-		PP_3421	0.75	+0.9
3,873,839	+		PP_3421	0.79	-1.3
3,873,839	+		PP_3421	0.79	-2.0
3,873,839	+		PP_3421	0.79	+0.4
3,873,840	-		PP_3421	0.79	-2.6
3,873,930	-		PP_3421	0.86	-3.1
3,873,948	+		PP_3421	0.87	+3.3
3,874,049	-				-1.5
3,874,173	+				-0.3
3,874,173	+				-0.1
3,874,176	-				+1.3
3,874,196	+				-0.9
3,874,197	+				-2.1
3,874,198	-				+0.9
3,874,204	-				-1.8
3,874,261	+				+0.4
3,874,262	-				-1.3
3,874,316	-				-0.5
3,874,379	-		PP_3422	0.11	-1.3
3,874,379	-		PP_3422	0.11	-0.5
3,874,379	-		PP_3422	0.11	-0.5
3,874,445	-		PP_3422	0.22	-0.3
3,874,445	-		PP_3422	0.22	-1.0
3,874,501	+		PP_3422	0.31	-4.1
3,874,502	-		PP_3422	0.32	-2.4
3,874,502	-				-2.2
3,874,628	-		PP_3422	0.53	+0.7
3,874,701	+		PP_3422	0.65	-0.2
3,874,712	-		PP_3422	0.67	+0.6
3,874,783	+		PP_3422	0.79	+0.6
3,874,784	-		PP_3422	0.79	-0.6
3,874,784	-		PP_3422	0.79	-2.9
3,874,784	-		PP_3422	0.79	-1.1
3,874,784	-		PP_3422	0.79	-0.9
3,874,784	-		PP_3422	0.79	-0.4
3,874,784	-		PP_3422	0.79	-0.8
3,874,784	-		PP_3422	0.79	-0.6
3,874,784	-		PP_3422	0.79	-1.1
3,874,785	-		PP_3422	0.79	-2.1
3,874,815	+		PP_3422	0.84	-1.4
3,874,815	+		PP_3422	0.84	-0.5
3,874,816	-		PP_3422	0.85	+3.7
3,874,816	-		PP_3422	0.85	-0.4
3,874,819	+		PP_3422	0.85	+2.2
3,874,820	-		PP_3422	0.85	+0.4
3,874,846	+		PP_3422	0.90	-2.6
3,874,846	+		PP_3422	0.90	-0.1
3,874,846	+		PP_3422	0.90	+0.3
3,874,846	+		PP_3422	0.90	-0.1
3,874,846	+		PP_3422	0.90	+0.2
3,874,846	+		PP_3422	0.90	-0.9
3,874,847	-		PP_3422	0.90	+0.7
3,874,893	-				-0.6
3,875,192	+		PP_3423	0.36	+0.2
3,875,192	+		PP_3423	0.36	+2.5
3,875,192	+		PP_3423	0.36	+0.5
3,875,192	+		PP_3423	0.36	+0.5
3,875,193	-		PP_3423	0.36	-2.6
3,875,271	-				+0.9
3,875,271	-		PP_3423	0.51	+0.3
3,875,364	-				-0.1
3,875,405	+		PP_3423	0.78	+0.2
3,875,405	+		PP_3423	0.78	+3.1
3,875,405	+		PP_3423	0.78	+1.7
3,875,405	+		PP_3423	0.78	-2.6
3,875,406	-		PP_3423	0.78	-2.1
3,875,406	-		PP_3423	0.78	+0.2
3,875,406	-		PP_3423	0.78	+0.9
3,875,406	-		PP_3423	0.78	-1.0
3,875,406	-		PP_3423	0.78	+0.8
3,875,406	-		PP_3423	0.78	+3.8
3,875,406	-		PP_3423	0.78	-0.5
3,875,406	-		PP_3423	0.78	+0.5
3,875,406	-		PP_3423	0.78	-2.1
3,875,406	-		PP_3423	0.78	+0.2
3,875,411	+		PP_3423	0.79	+1.2
3,875,412	-		PP_3423	0.79	+0.8
3,875,506	+				+0.8
3,875,507	-				+0.1
3,875,507	-				-0.3
3,875,507	-				+0.8
3,875,517	-				-0.1
3,875,537	-				+1.4
3,875,902	+		PP_3424	0.32	+0.5
3,875,903	-		PP_3424	0.33	-0.1
3,875,903	-		PP_3424	0.33	-1.5