Strain Fitness in Pseudomonas putida KT2440 around PP_3256

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
3,689,579	+				+1.9
3,689,691	+				-1.5
3,689,899	+		PP_3255	0.22	-1.3
3,689,900	-		PP_3255	0.22	+1.9
3,689,933	+		PP_3255	0.26	+1.1
3,689,933	+		PP_3255	0.26	+0.6
3,689,934	-		PP_3255	0.26	+0.0
3,689,934	-		PP_3255	0.26	-1.6
3,690,051	-		PP_3255	0.40	-0.9
3,690,051	-		PP_3255	0.40	+1.9
3,690,054	-		PP_3255	0.41	-1.6
3,690,086	+		PP_3255	0.45	+0.6
3,690,086	+		PP_3255	0.45	-0.6
3,690,087	-				-1.4
3,690,087	-		PP_3255	0.45	+1.6
3,690,087	-		PP_3255	0.45	-0.5
3,690,144	+		PP_3255	0.52	-3.1
3,690,144	+		PP_3255	0.52	-0.1
3,690,145	-		PP_3255	0.52	-1.5
3,690,145	-		PP_3255	0.52	+1.4
3,690,145	-		PP_3255	0.52	-2.4
3,690,316	-		PP_3255	0.73	+1.0
3,690,316	-		PP_3255	0.73	+2.1
3,690,350	+		PP_3255	0.77	+2.3
3,690,350	+		PP_3255	0.77	-0.4
3,690,350	+		PP_3255	0.77	-1.5
3,690,351	-		PP_3255	0.77	+0.7
3,690,647	-		PP_3256	0.13	+2.4
3,690,647	-		PP_3256	0.13	+0.1
3,690,686	+		PP_3256	0.19	+0.5
3,690,687	-		PP_3256	0.19	+3.4
3,690,750	+		PP_3256	0.28	+4.0
3,690,750	+		PP_3256	0.28	+0.2
3,690,750	+		PP_3256	0.28	+0.8
3,690,751	-		PP_3256	0.28	-1.6
3,690,825	+		PP_3256	0.40	-0.6
3,690,902	-		PP_3256	0.51	+0.7
3,691,050	-		PP_3256	0.74	+3.9
3,691,100	+		PP_3256	0.81	+1.4
3,691,196	-				-1.3
3,691,269	-				+0.5
3,691,269	-				+1.5
3,691,334	-		PP_3257	0.19	-0.1
3,691,413	-		PP_3257	0.32	-0.1
3,691,469	+		PP_3257	0.42	-0.2
3,691,469	+		PP_3257	0.42	-1.1
3,691,469	+		PP_3257	0.42	-3.2
3,691,470	-		PP_3257	0.42	+3.4
3,691,470	-		PP_3257	0.42	+1.2
3,691,470	-		PP_3257	0.42	+0.7
3,691,470	-		PP_3257	0.42	-2.2
3,691,470	-		PP_3257	0.42	-0.6
3,691,470	-		PP_3257	0.42	-0.1
3,691,472	+		PP_3257	0.42	-1.6
3,691,473	-		PP_3257	0.42	-3.8
3,691,473	-		PP_3257	0.42	-0.6
3,691,691	+		PP_3257	0.79	+1.0
3,691,692	-		PP_3257	0.79	-0.6
3,691,692	-		PP_3257	0.79	-1.2
3,691,742	+		PP_3257	0.87	+0.1
3,691,784	+				-0.1
3,691,786	+				+1.9
3,691,786	+				-0.9
3,691,787	-				+0.1
3,691,787	-				+1.4
3,691,787	-				-0.1
3,691,787	-				-0.4
3,691,800	-				-0.3
3,692,046	+		PP_3258	0.29	-1.3