Strain Fitness in Pseudomonas putida KT2440 around PP_3072

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
3,455,082	+		PP_3071	0.59	-0.2
3,455,082	+		PP_3071	0.59	+0.7
3,455,091	+		PP_3071	0.59	+0.3
3,455,092	-		PP_3071	0.59	+0.0
3,455,092	-		PP_3071	0.59	+0.6
3,455,298	+		PP_3071	0.70	-1.1
3,455,298	+		PP_3071	0.70	+0.7
3,455,298	+		PP_3071	0.70	-0.2
3,455,299	-		PP_3071	0.70	-1.3
3,455,299	-		PP_3071	0.70	-0.2
3,455,389	+		PP_3071	0.74	-1.1
3,455,446	+		PP_3071	0.77	+1.7
3,455,489	+		PP_3071	0.79	+2.8
3,455,785	-				+0.1
3,455,785	-				-2.2
3,455,805	+				-0.1
3,455,805	+				-1.7
3,455,984	+				-0.7
3,455,984	+				+0.6
3,455,985	-				-0.2
3,455,989	+				+1.4
3,455,989	+				+0.9
3,455,989	+				-2.0
3,455,989	+				+0.9
3,455,990	-				-1.9
3,455,990	-				-1.4
3,455,990	-				-3.0
3,455,990	-				-2.1
3,456,059	+		PP_3072	0.16	-0.8
3,456,059	+		PP_3072	0.16	+0.4
3,456,059	+		PP_3072	0.16	-2.0
3,456,059	+		PP_3072	0.16	-1.2
3,456,059	+		PP_3072	0.16	+1.7
3,456,059	+		PP_3072	0.16	-0.7
3,456,059	+		PP_3072	0.16	+0.9
3,456,060	-		PP_3072	0.16	-1.3
3,456,060	-		PP_3072	0.16	-3.1
3,456,060	-		PP_3072	0.16	-2.8
3,456,060	-		PP_3072	0.16	-1.7
3,456,060	-		PP_3072	0.16	-0.9
3,456,087	-		PP_3072	0.22	-1.1
3,456,087	-		PP_3072	0.22	-0.4
3,456,197	+		PP_3072	0.45	-0.9
3,456,197	+		PP_3072	0.45	+1.8
3,456,197	+		PP_3072	0.45	-2.4
3,456,198	-		PP_3072	0.45	-1.1
3,456,198	-		PP_3072	0.45	-1.9
3,456,198	-		PP_3072	0.45	-1.7
3,456,301	-		PP_3072	0.66	-2.7
3,456,302	+		PP_3072	0.66	-0.1
3,456,302	+		PP_3072	0.66	+0.6
3,456,596	+		PP_3073	0.10	+3.1
3,456,597	-		PP_3073	0.10	-0.2
3,456,749	+		PP_3073	0.30	-0.1
3,456,750	-		PP_3073	0.30	-0.5
3,456,750	-		PP_3073	0.30	+4.2
3,456,750	-		PP_3073	0.30	-1.5
3,456,834	+		PP_3073	0.41	-0.9
3,456,834	+		PP_3073	0.41	+2.1
3,456,835	-		PP_3073	0.41	+4.4
3,456,835	-		PP_3073	0.41	-0.2
3,457,021	+		PP_3073	0.65	-0.8
3,457,217	+				+3.4
3,457,218	-				-0.5
3,457,300	+				-0.2
3,457,301	-				+0.3
3,457,318	+				-0.6
3,457,384	+				-3.5
3,457,384	+				-4.9
3,457,384	+				-0.3
3,457,384	+				-0.1
3,457,385	-				+1.7
3,457,385	-				+0.4
3,457,385	-				+0.7