Strain Fitness in Pseudomonas putida KT2440 around PP_3056

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
3,435,942	-		PP_3054	0.87	-2.5
3,435,942	-		PP_3054	0.87	+1.4
3,435,942	-		PP_3054	0.87	+2.5
3,435,952	-		PP_3054	0.88	+0.1
3,435,957	+		PP_3054	0.88	+1.1
3,436,022	+				-0.3
3,436,023	-				+3.1
3,436,238	-		PP_3055	0.21	-1.1
3,436,370	+		PP_3055	0.37	+0.5
3,436,510	+		PP_3055	0.55	-1.1
3,436,772	-		PP_3055	0.87	-1.5
3,436,875	-				+1.8
3,436,888	+				-0.5
3,436,889	-				-1.8
3,436,990	-		PP_3056	0.13	-0.1
3,437,037	+		PP_3056	0.18	-0.1
3,437,038	-		PP_3056	0.19	-0.1
3,437,193	+		PP_3056	0.36	-0.5
3,437,193	+		PP_3056	0.36	+0.4
3,437,193	+		PP_3056	0.36	-2.1
3,437,194	-		PP_3056	0.36	-2.3
3,437,194	-		PP_3056	0.36	+1.6
3,437,194	-		PP_3056	0.36	+1.3
3,437,738	+				+0.4
3,437,738	+				-1.9
3,437,739	-				+1.9
3,437,751	+				+1.3
3,437,752	-				+0.3
3,437,752	-				-1.0
3,437,752	-				+0.7
3,437,752	-				-0.1
3,437,759	+				-0.1
3,437,760	-				+1.3
3,437,760	-				-2.9
3,437,760	-				-3.6
3,437,817	+				-2.1
3,437,817	+				-0.3
3,437,846	+		PP_3057	0.12	+3.5
3,437,847	-		PP_3057	0.12	-0.5
3,437,898	+		PP_3057	0.19	-1.0
3,437,898	+		PP_3057	0.19	+0.1
3,437,899	-		PP_3057	0.19	+0.4
3,437,899	-		PP_3057	0.19	+1.2
3,437,935	+		PP_3057	0.24	+1.5
3,437,937	-		PP_3057	0.24	+0.3
3,437,937	-		PP_3057	0.24	-1.9
3,437,937	-		PP_3057	0.24	-1.1
3,438,024	+		PP_3057	0.36	+0.6
3,438,025	-		PP_3057	0.36	-0.7
3,438,025	-		PP_3057	0.36	-0.7
3,438,026	+		PP_3057	0.36	+4.1
3,438,026	+		PP_3057	0.36	+0.9
3,438,027	-		PP_3057	0.36	-0.1
3,438,027	-		PP_3057	0.36	+1.2
3,438,187	+		PP_3057	0.58	+3.2
3,438,188	-		PP_3057	0.58	-0.1
3,438,188	-		PP_3057	0.58	+0.6
3,438,193	-		PP_3057	0.58	-0.5
3,438,194	+		PP_3057	0.59	-2.0
3,438,194	+		PP_3057	0.59	+0.9
3,438,195	-		PP_3057	0.59	+0.7
3,438,195	-		PP_3057	0.59	+1.3
3,438,230	-		PP_3057	0.63	-1.1
3,438,249	+		PP_3057	0.66	-0.2
3,438,249	+		PP_3057	0.66	-0.4
3,438,249	+		PP_3057	0.66	-4.7
3,438,249	+		PP_3057	0.66	-0.2
3,438,249	+		PP_3057	0.66	+0.7
3,438,249	+		PP_3057	0.66	-0.8
3,438,249	+		PP_3057	0.66	+0.9
3,438,249	+		PP_3057	0.66	+2.0
3,438,249	+		PP_3057	0.66	-0.9
3,438,250	-		PP_3057	0.66	+0.3
3,438,250	-		PP_3057	0.66	-2.1
3,438,250	-		PP_3057	0.66	+2.9
3,438,252	+		PP_3057	0.66	-0.6
3,438,252	+		PP_3057	0.66	-0.6
3,438,253	-		PP_3057	0.67	+1.5
3,438,293	+		PP_3057	0.72	-0.9
3,438,310	-		PP_3057	0.74	+0.2
3,438,485	+				+0.0
3,438,485	+				-0.6
3,438,486	-				-0.3
3,438,486	-				+1.4
3,438,519	-				+0.1
3,438,551	-				+3.7
3,438,565	+				-1.9
3,438,565	+				-1.2
3,438,566	-				-0.1
3,438,670	-		PP_3058	0.32	+0.4
3,438,750	-		PP_3058	0.49	+4.4
3,438,750	-		PP_3058	0.49	+0.0