Strain Fitness in Pseudomonas putida KT2440 around PP_2811

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
3,203,850	-		PP_2810	0.42	-0.3
3,203,979	+		PP_2810	0.51	-0.7
3,203,980	-		PP_2810	0.51	-0.7
3,203,980	-		PP_2810	0.51	+4.9
3,204,054	+		PP_2810	0.57	+1.3
3,204,058	-		PP_2810	0.57	-0.4
3,204,096	+		PP_2810	0.59	-0.1
3,204,096	+		PP_2810	0.59	+1.1
3,204,097	-		PP_2810	0.60	+0.3
3,204,097	-		PP_2810	0.60	+3.6
3,204,102	+		PP_2810	0.60	-3.3
3,204,102	+		PP_2810	0.60	-0.5
3,204,103	-		PP_2810	0.60	+4.1
3,204,103	-		PP_2810	0.60	-1.4
3,204,135	+		PP_2810	0.62	-2.4
3,204,135	+		PP_2810	0.62	+0.1
3,204,136	-		PP_2810	0.62	-1.4
3,204,222	+		PP_2810	0.68	-0.7
3,204,222	+		PP_2810	0.68	+1.2
3,204,222	+		PP_2810	0.68	-1.3
3,204,223	-		PP_2810	0.68	+0.3
3,204,223	-		PP_2810	0.68	-0.1
3,204,223	-		PP_2810	0.68	+0.3
3,204,240	+		PP_2810	0.70	-3.3
3,204,260	-		PP_2810	0.71	+0.5
3,204,306	+		PP_2810	0.74	-0.8
3,204,384	+		PP_2810	0.80	-0.8
3,204,385	-		PP_2810	0.80	-2.3
3,204,385	-		PP_2810	0.80	-0.2
3,204,519	+		PP_2810	0.89	+1.9
3,204,520	-				+1.5
3,204,540	+				+2.2
3,204,541	-				-6.0
3,204,541	-				-1.4
3,204,581	+				+0.9
3,204,831	+				-2.5
3,204,832	-				-3.0
3,204,967	+		PP_2811	0.16	-2.3
3,205,292	-		PP_2811	0.36	-0.5
3,205,396	+		PP_2811	0.42	-1.3
3,205,396	+		PP_2811	0.42	-1.3
3,205,397	-		PP_2811	0.43	-0.5
3,205,400	-		PP_2811	0.43	-0.2
3,205,400	-		PP_2811	0.43	-2.4
3,205,400	-		PP_2811	0.43	+0.2
3,205,444	+		PP_2811	0.45	+0.0
3,205,444	+		PP_2811	0.45	-1.3
3,205,444	+		PP_2811	0.45	-2.3
3,205,445	-		PP_2811	0.45	-1.5
3,205,445	-		PP_2811	0.45	-0.5
3,205,486	+		PP_2811	0.48	-0.5
3,205,570	+		PP_2811	0.53	-0.7
3,205,571	-		PP_2811	0.53	+0.7
3,205,571	-		PP_2811	0.53	+1.4
3,205,571	-		PP_2811	0.53	-0.8
3,205,571	-		PP_2811	0.53	-0.7
3,205,571	-		PP_2811	0.53	-1.5
3,205,687	+		PP_2811	0.60	+4.2
3,205,687	+		PP_2811	0.60	-0.1
3,205,687	+		PP_2811	0.60	-0.4
3,205,687	+		PP_2811	0.60	-3.5
3,205,687	+		PP_2811	0.60	+2.1
3,205,688	-		PP_2811	0.60	+1.2
3,206,083	+		PP_2811	0.84	-1.6
3,206,084	-		PP_2811	0.84	-3.8
3,206,084	-		PP_2811	0.84	-1.9
3,206,084	-		PP_2811	0.84	-0.4
3,206,296	+				+0.8
3,206,297	-				+0.7
3,206,371	+				-1.6
3,206,541	+				-0.7
3,206,542	-				-0.1
3,206,542	-				+1.1
3,206,624	+		PP_2812	0.11	-0.6
3,206,625	-		PP_2812	0.11	+0.9
3,206,625	-		PP_2812	0.11	-3.1
3,206,626	+		PP_2812	0.11	+1.2
3,206,626	+		PP_2812	0.11	-2.1
3,206,626	+		PP_2812	0.11	-2.4
3,206,626	+		PP_2812	0.11	-2.2
3,206,627	-		PP_2812	0.11	-1.1
3,206,627	-		PP_2812	0.11	-1.9
3,206,627	-		PP_2812	0.11	+0.5
3,206,627	-		PP_2812	0.11	-0.9
3,206,627	-		PP_2812	0.11	-0.8
3,206,655	+		PP_2812	0.13	+1.4
3,206,655	+		PP_2812	0.13	-0.1
3,206,655	+		PP_2812	0.13	+1.7
3,206,946	+		PP_2812	0.25	-1.7
3,206,947	-		PP_2812	0.25	-0.1
3,206,947	-		PP_2812	0.25	-3.9
3,206,947	-		PP_2812	0.25	+0.6
3,207,071	-		PP_2812	0.30	+1.8
3,207,117	+		PP_2812	0.32	+1.1
3,207,118	-		PP_2812	0.32	+0.7