Strain Fitness in Pseudomonas putida KT2440 around PP_2694

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
3,084,307	+		PP_2693	0.19	+0.2
3,084,308	-		PP_2693	0.19	+0.2
3,084,737	-		PP_2693	0.62	-0.3
3,084,769	+		PP_2693	0.65	-1.6
3,084,867	-		PP_2693	0.75	+0.1
3,085,053	+				-3.8
3,085,054	-				+1.0
3,085,054	-				+0.4
3,085,055	+				-0.7
3,085,056	-				+0.6
3,085,116	+				+2.5
3,085,116	+				+1.6
3,085,116	+				-1.0
3,085,117	-				-0.2
3,085,117	-				-1.0
3,085,136	+				-1.6
3,085,137	-				+0.5
3,085,158	-				-2.4
3,085,172	+				+3.9
3,085,172	+				+0.0
3,085,209	+				+1.1
3,085,209	+				+0.3
3,085,233	-				-1.7
3,085,233	-				-2.0
3,085,478	+		PP_2694	0.25	-0.1
3,085,478	+		PP_2694	0.25	+1.3
3,085,478	+		PP_2694	0.25	-2.5
3,085,478	+		PP_2694	0.25	+1.8
3,085,478	+		PP_2694	0.25	+0.8
3,085,479	-		PP_2694	0.25	-1.7
3,085,479	-				-0.9
3,085,481	+		PP_2694	0.25	+0.9
3,085,482	-		PP_2694	0.25	-0.0
3,085,482	-		PP_2694	0.25	+2.1
3,085,519	+		PP_2694	0.27	+1.0
3,085,519	+		PP_2694	0.27	+1.9
3,085,592	-		PP_2694	0.33	+1.3
3,086,124	+		PP_2694	0.69	+0.9
3,086,134	+		PP_2694	0.70	+0.5
3,086,228	+		PP_2694	0.77	-1.7
3,086,232	-		PP_2694	0.77	-0.7
3,086,495	+				+1.5
3,086,495	+				-0.9
3,086,496	-				-1.0
3,086,496	-				+0.8
3,086,496	-				-2.9
3,086,496	-				+0.8
3,086,496	-				+1.1
3,086,496	-				+0.1
3,086,496	-				-0.2
3,086,540	+				+1.6
3,086,540	+				-3.1
3,086,540	+				+1.3
3,086,541	-				-0.6
3,086,541	-				-0.1
3,086,549	+				+0.4
3,086,550	-				-1.3
3,086,550	-				-3.5
3,086,656	+				-1.1
3,086,701	+				+1.0
3,086,836	+		PP_2695	0.21	+0.4
3,087,374	+		PP_2695	0.80	+0.9
3,087,374	+		PP_2695	0.80	-0.2
3,087,375	-		PP_2695	0.81	+0.9
3,087,375	-		PP_2695	0.81	-0.8
3,087,384	+		PP_2695	0.82	+0.5