Strain Fitness in Pseudomonas putida KT2440 around PP_2624

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
2,999,648	+		PP_2623	0.45	+1.0
2,999,649	-		PP_2623	0.45	-2.9
2,999,681	+		PP_2623	0.47	+0.9
2,999,681	+		PP_2623	0.47	-0.8
2,999,842	-		PP_2623	0.58	+0.5
2,999,934	-		PP_2623	0.64	-0.8
2,999,939	-		PP_2623	0.64	-0.0
2,999,976	-		PP_2623	0.67	+2.3
3,000,044	+		PP_2623	0.71	-0.5
3,000,044	+		PP_2623	0.71	-0.5
3,000,334	+				-0.1
3,000,373	+				+0.3
3,000,373	+				-0.5
3,000,373	+				-0.4
3,000,374	-				-2.2
3,000,415	-				+1.0
3,000,563	+		PP_2624	0.14	-1.6
3,000,564	-		PP_2624	0.14	-1.4
3,000,564	-		PP_2624	0.14	-2.1
3,000,815	+		PP_2624	0.64	-0.1
3,000,815	+		PP_2624	0.64	-3.3
3,000,815	+		PP_2624	0.64	+1.3
3,000,816	-		PP_2624	0.64	-1.0
3,000,816	-				-0.1
3,001,051	-				+3.3
3,001,083	-				-1.6
3,001,200	+				-0.1
3,001,286	-				-2.7
3,001,338	+				+0.9
3,001,338	+				+0.8
3,001,338	+				-0.1
3,001,339	-				-0.6
3,001,340	+				+1.5
3,001,470	-		PP_2625	0.28	+0.5
3,001,658	+		PP_2625	0.55	-0.7
3,001,658	+		PP_2625	0.55	-2.6
3,001,658	+		PP_2625	0.55	-0.1
3,001,659	-		PP_2625	0.55	-0.9
3,001,659	-		PP_2625	0.55	+1.4
3,001,677	+		PP_2625	0.57	-1.5
3,001,677	+		PP_2625	0.57	-1.9
3,001,677	+		PP_2625	0.57	-2.1
3,001,678	-				+1.3
3,001,740	+		PP_2625	0.67	+1.6
3,001,741	-		PP_2625	0.67	+1.5