Strain Fitness in Pseudomonas putida KT2440 around PP_2566

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
2,928,255	+		PP_2565	0.62	-1.4
2,928,255	+		PP_2565	0.62	-0.7
2,928,307	+		PP_2565	0.64	-2.2
2,928,308	-		PP_2565	0.64	+2.6
2,928,308	-		PP_2565	0.64	-2.3
2,928,498	+		PP_2565	0.71	+0.4
2,928,525	+		PP_2565	0.72	-1.5
2,928,526	-		PP_2565	0.72	+0.7
2,928,763	-		PP_2565	0.82	+2.3
2,928,898	-		PP_2565	0.88	-0.6
2,928,972	+				+2.6
2,928,986	-				-2.0
2,928,986	-				-2.8
2,928,986	-				+0.5
2,929,068	+				-0.8
2,929,069	-				+3.8
2,929,069	-				-0.3
2,929,090	+				+2.0
2,929,339	-				+2.6
2,929,444	+				+0.0
2,929,444	+				-1.5
2,929,444	+				-1.1
2,929,445	-				-2.5
2,929,445	-				-1.5
2,929,445	-				+0.1
2,929,445	-				-0.2
2,929,447	+				-2.1
2,929,447	+				-1.6
2,929,448	-				-4.1
2,929,448	-				-0.6
2,929,448	-				-3.1
2,929,448	-				-3.3
2,929,453	+				-0.6
2,929,453	+				+1.0
2,929,454	-				+0.7
2,929,454	-				+1.0
2,929,642	+				+0.9
2,929,710	+		PP_2566	0.10	+1.0
2,929,888	+		PP_2566	0.14	+2.3
2,929,888	+		PP_2566	0.14	-1.4
2,929,911	+		PP_2566	0.14	+3.2
2,929,911	+		PP_2566	0.14	+0.6
2,929,911	+		PP_2566	0.14	+0.1
2,929,912	-		PP_2566	0.14	+0.3
2,929,965	+		PP_2566	0.15	+2.9
2,929,966	-		PP_2566	0.15	+0.5
2,929,966	-		PP_2566	0.15	+0.7
2,929,966	-		PP_2566	0.15	+0.1
2,930,152	-		PP_2566	0.19	-0.3
2,930,329	+		PP_2566	0.23	-1.0
2,930,330	-		PP_2566	0.23	+0.1
2,930,417	+		PP_2566	0.25	+1.4
2,930,595	+		PP_2566	0.28	+1.4
2,930,596	-		PP_2566	0.28	+0.7
2,930,657	+		PP_2566	0.30	+2.0
2,930,987	+		PP_2566	0.36	-0.9
2,930,988	-		PP_2566	0.36	+0.9
2,931,032	+		PP_2566	0.37	-0.0
2,931,033	-		PP_2566	0.37	-0.6
2,931,176	+		PP_2566	0.40	-4.1
2,931,176	+				-0.0
2,931,438	+		PP_2566	0.46	+1.5
2,931,438	+		PP_2566	0.46	-2.3
2,931,439	-		PP_2566	0.46	-1.4
2,931,507	+		PP_2566	0.47	+1.6
2,931,507	+		PP_2566	0.47	-0.0
2,932,004	-		PP_2566	0.57	-3.3
2,932,073	-		PP_2566	0.59	-1.5
2,932,372	+		PP_2566	0.65	-0.4
2,932,372	+		PP_2566	0.65	+0.4
2,932,372	+		PP_2566	0.65	-1.4
2,932,373	-		PP_2566	0.65	-1.3
2,932,373	-		PP_2566	0.65	-0.5
2,932,435	+		PP_2566	0.66	-0.0
2,932,459	+		PP_2566	0.66	-0.0
2,932,460	-		PP_2566	0.66	+1.6
2,932,460	-		PP_2566	0.66	+0.4
2,932,534	+		PP_2566	0.68	+1.2
2,932,535	-		PP_2566	0.68	-2.0
2,932,535	-		PP_2566	0.68	-0.5
2,932,582	-		PP_2566	0.69	+0.4
2,932,582	-		PP_2566	0.69	-1.6
2,932,754	-		PP_2566	0.72	+0.7
2,932,767	+		PP_2566	0.73	+0.7
2,932,767	+		PP_2566	0.73	-3.2
2,932,768	-		PP_2566	0.73	+3.0
2,932,937	-		PP_2566	0.76	-1.6
2,932,938	+		PP_2566	0.76	-2.1
2,932,938	+		PP_2566	0.76	-3.9
2,932,938	+		PP_2566	0.76	+0.9
2,932,939	-				+2.0
2,932,939	-		PP_2566	0.76	-1.8
2,932,939	-				-0.0
2,932,939	-		PP_2566	0.76	-0.2
2,932,939	-		PP_2566	0.76	+1.0
2,933,010	+		PP_2566	0.78	+2.8
2,933,011	-		PP_2566	0.78	-0.0
2,933,011	-		PP_2566	0.78	-1.0
2,933,051	+		PP_2566	0.79	+0.7
2,933,081	-				+2.3
2,933,200	+		PP_2566	0.82	+0.7
2,933,200	+		PP_2566	0.82	-1.1
2,933,200	+		PP_2566	0.82	+0.1
2,933,200	+		PP_2566	0.82	+1.7
2,933,200	+		PP_2566	0.82	+0.9
2,933,201	-		PP_2566	0.82	-3.7
2,933,201	-		PP_2566	0.82	-0.2
2,933,201	-		PP_2566	0.82	-1.2
2,933,224	+		PP_2566	0.82	-0.6
2,933,251	-		PP_2566	0.83	+0.8
2,933,311	+		PP_2566	0.84	+2.8
2,933,312	-		PP_2566	0.84	-0.0
2,933,312	-		PP_2566	0.84	+0.7
2,933,312	-		PP_2566	0.84	+0.6
2,933,596	+		PP_2566	0.90	+0.7
2,933,597	-		PP_2566	0.90	+2.8
2,933,597	-		PP_2566	0.90	+2.4
2,933,597	-		PP_2566	0.90	-1.4
2,933,597	-		PP_2566	0.90	+0.8
2,933,779	+				+0.6
2,933,780	-				+1.7
2,933,780	-				-0.5
2,933,793	+				+1.2
2,933,954	-				+1.6
2,933,995	+				+0.2
2,934,020	+				+0.8
2,934,020	+				-1.6
2,934,055	-				-0.9
2,934,130	-				-3.0
2,934,130	-				+0.8
2,934,162	-				-2.6
2,934,162	-				+0.2
2,934,165	+				-0.5
2,934,165	+				-2.3
2,934,166	-				-1.0
2,934,166	-				-0.2
2,934,166	-				+0.1
2,934,192	+				-0.0
2,934,319	-				-0.0
2,934,370	+				+1.1
2,934,379	-		PP_2567	0.10	+4.1
2,934,512	+		PP_2567	0.25	-2.1
2,934,513	-		PP_2567	0.25	-0.4
2,934,515	+		PP_2567	0.25	+1.3
2,934,515	+		PP_2567	0.25	-0.8
2,934,515	+		PP_2567	0.25	-0.4
2,934,516	-		PP_2567	0.25	-0.1
2,934,516	-		PP_2567	0.25	-0.2
2,934,516	-		PP_2567	0.25	-1.0
2,934,607	+		PP_2567	0.35	-2.2
2,934,609	+		PP_2567	0.35	+0.3
2,934,609	+		PP_2567	0.35	-0.5
2,934,609	+		PP_2567	0.35	+1.7
2,934,610	-		PP_2567	0.35	+3.7
2,934,744	+		PP_2567	0.50	+0.6
2,934,744	-		PP_2567	0.50	-0.3
2,934,745	-		PP_2567	0.50	+0.5
2,934,888	+		PP_2567	0.65	+0.1
2,934,888	+		PP_2567	0.65	+1.6
2,934,889	-		PP_2567	0.65	-1.6
2,934,905	+		PP_2567	0.67	+4.1
2,934,933	+		PP_2567	0.70	-0.3
2,934,933	+		PP_2567	0.70	+1.2