Strain Fitness in Pseudomonas putida KT2440 around PP_2545

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
2,889,759	-		PP_2543	0.54	+1.6
2,889,759	-		PP_2543	0.54	-0.3
2,889,759	-		PP_2543	0.54	+0.3
2,889,827	+		PP_2543	0.59	+1.3
2,889,828	-		PP_2543	0.59	+0.9
2,889,869	+		PP_2543	0.62	+3.5
2,889,870	-		PP_2543	0.62	+0.3
2,890,062	+		PP_2543	0.76	-3.1
2,890,062	+		PP_2543	0.76	-0.8
2,890,063	-				+0.0
2,890,063	-		PP_2543	0.76	+0.6
2,890,063	-		PP_2543	0.76	+0.9
2,890,063	-		PP_2543	0.76	+0.8
2,890,154	+		PP_2543	0.82	-1.1
2,890,155	-		PP_2543	0.82	-1.4
2,890,155	-		PP_2543	0.82	+1.3
2,890,219	-		PP_2543	0.87	-1.0
2,890,253	+		PP_2543	0.89	+0.0
2,890,253	+		PP_2543	0.89	-0.8
2,890,254	-		PP_2543	0.89	-1.5
2,890,254	-		PP_2543	0.89	+1.2
2,890,390	+				-3.1
2,890,403	+				-1.6
2,890,404	-				+0.6
2,890,567	-		PP_2544	0.79	+0.9
2,890,567	-		PP_2544	0.79	+3.5
2,890,628	+				+0.5
2,890,667	+				-0.1
2,890,667	+				+2.8
2,890,668	-				-1.2
2,890,668	-				+0.3
2,890,668	-				-0.3
2,890,668	-				-0.5
2,890,672	+				-0.3
2,890,672	+				-0.5
2,890,672	+				+1.0
2,890,672	+				+1.0
2,890,673	-				-0.4
2,890,673	-				+0.9
2,890,673	-				-1.6
2,890,680	+				-1.1
2,890,681	-				-0.3
2,890,681	-				+3.9
2,890,681	-				-0.5
2,890,681	-				+0.7
2,890,681	-				+0.4
2,890,681	-				-0.1
2,890,681	-				-4.2
2,890,724	+				-1.7
2,891,048	+		PP_2545	0.47	+1.3
2,891,216	+		PP_2545	0.68	+2.0
2,891,216	+		PP_2545	0.68	+4.5
2,891,217	-		PP_2545	0.68	+1.8
2,891,217	-		PP_2545	0.68	-1.4
2,891,270	+		PP_2545	0.74	-1.3
2,891,270	+		PP_2545	0.74	+1.6
2,891,270	+		PP_2545	0.74	+1.0
2,891,270	+		PP_2545	0.74	+0.1
2,891,270	+		PP_2545	0.74	+0.5
2,891,270	+		PP_2545	0.74	+3.1
2,891,339	+		PP_2545	0.83	-0.7
2,891,339	+		PP_2545	0.83	+0.6
2,891,387	+		PP_2545	0.89	+0.2
2,891,387	+		PP_2545	0.89	+0.6
2,891,388	-		PP_2545	0.89	-0.2
2,891,503	+				+0.0
2,891,504	-				+0.8
2,891,504	-				+1.5
2,891,504	-				-3.3
2,891,509	+		PP_2546	0.11	+0.8
2,891,510	-		PP_2546	0.11	-1.0
2,891,510	-		PP_2546	0.11	-4.4
2,891,510	-		PP_2546	0.11	-4.4
2,891,582	-		PP_2546	0.30	+0.6
2,891,599	+		PP_2546	0.35	+0.1
2,891,599	+		PP_2546	0.35	-0.7
2,891,599	+		PP_2546	0.35	+0.6
2,891,600	-		PP_2546	0.35	-0.8
2,891,624	-		PP_2546	0.42	-0.9
2,891,834	-				-0.4
2,891,834	-				-0.7
2,891,876	+				+0.3
2,891,877	-				-1.1
2,891,877	-				+1.6
2,891,877	-				-1.9
2,891,877	-				-0.4
2,891,877	-				-0.6
2,891,899	+				+2.2
2,891,900	-				+0.7
2,891,900	-				+2.3
2,892,072	+		PP_2547	0.20	-0.2
2,892,355	+		PP_2547	0.53	+0.4