Experiment: pH 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_2496 and PP_2497 are separated by 37 nucleotides PP_2497 and PP_2498 are separated by 204 nucleotides PP_2498 and PP_2499 are separated by 124 nucleotides PP_2499 and PP_2500 overlap by 13 nucleotides PP_2500 and PP_2501 overlap by 7 nucleotides
PP_2496: PP_2496 - conserved protein of unknown function, at 2,844,720 to 2,845,748
_2496
PP_2497: PP_2497 - conserved protein of unknown function, at 2,845,786 to 2,846,115
_2497
PP_2498: PP_2498 - conserved protein of unknown function, at 2,846,320 to 2,846,565
_2498
PP_2499: PP_2499 - conserved protein of unknown function, at 2,846,690 to 2,846,962
_2499
PP_2500: PP_2500 - conserved protein of unknown function, at 2,846,950 to 2,847,243
_2500
PP_2501: PP_2501 - putative phage integrase, at 2,847,237 to 2,848,646
_2501
Position (kb)
2846
2847 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2845.760 kb on + strand at 2845.760 kb on + strand at 2845.760 kb on + strand at 2845.760 kb on + strand at 2845.761 kb on - strand at 2845.761 kb on - strand at 2845.819 kb on + strand, within PP_2497 at 2845.819 kb on + strand, within PP_2497 at 2846.150 kb on + strand at 2846.151 kb on - strand at 2846.151 kb on - strand at 2846.151 kb on - strand at 2846.194 kb on + strand at 2846.195 kb on - strand at 2846.196 kb on + strand at 2846.214 kb on + strand at 2846.214 kb on + strand at 2846.215 kb on - strand at 2846.215 kb on - strand at 2846.220 kb on + strand at 2846.220 kb on + strand at 2846.412 kb on - strand at 2846.412 kb on - strand, within PP_2498 at 2846.437 kb on - strand, within PP_2498 at 2846.443 kb on + strand, within PP_2498 at 2846.443 kb on + strand, within PP_2498 at 2846.444 kb on - strand, within PP_2498 at 2846.444 kb on - strand, within PP_2498 at 2846.444 kb on - strand, within PP_2498 at 2846.464 kb on + strand, within PP_2498 at 2846.465 kb on - strand, within PP_2498 at 2846.465 kb on - strand, within PP_2498 at 2846.474 kb on + strand, within PP_2498 at 2846.475 kb on - strand, within PP_2498 at 2846.563 kb on + strand at 2846.563 kb on + strand at 2846.618 kb on + strand at 2846.618 kb on + strand at 2846.700 kb on - strand at 2846.915 kb on - strand, within PP_2499 at 2846.915 kb on - strand, within PP_2499 at 2846.944 kb on - strand at 2847.096 kb on - strand, within PP_2500 at 2847.096 kb on - strand, within PP_2500 at 2847.173 kb on - strand, within PP_2500 at 2847.179 kb on - strand, within PP_2500 at 2847.179 kb on - strand, within PP_2500 at 2847.202 kb on + strand, within PP_2500 at 2847.203 kb on - strand at 2847.347 kb on - strand at 2847.347 kb on - strand at 2847.399 kb on + strand, within PP_2501 at 2847.411 kb on + strand, within PP_2501 at 2847.412 kb on - strand, within PP_2501 at 2847.412 kb on - strand, within PP_2501 at 2847.412 kb on - strand, within PP_2501 at 2847.588 kb on - strand, within PP_2501 at 2847.588 kb on - strand, within PP_2501 at 2847.716 kb on + strand, within PP_2501 at 2847.717 kb on - strand, within PP_2501 at 2847.717 kb on - strand, within PP_2501 at 2847.717 kb on - strand, within PP_2501 at 2847.901 kb on + strand, within PP_2501
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5 remove 2,845,760 + -3.5 2,845,760 + -0.7 2,845,760 + -1.9 2,845,760 + +1.5 2,845,761 - +0.0 2,845,761 - -4.0 2,845,819 + PP_2497 0.10 -2.9 2,845,819 + PP_2497 0.10 +0.7 2,846,150 + +0.4 2,846,151 - +0.5 2,846,151 - +0.4 2,846,151 - -1.2 2,846,194 + +1.6 2,846,195 - -0.9 2,846,196 + -1.2 2,846,214 + +0.5 2,846,214 + +0.3 2,846,215 - -0.2 2,846,215 - +0.8 2,846,220 + +0.1 2,846,220 + -0.5 2,846,412 - +0.0 2,846,412 - PP_2498 0.37 -0.3 2,846,437 - PP_2498 0.48 -3.8 2,846,443 + PP_2498 0.50 -1.5 2,846,443 + PP_2498 0.50 -1.2 2,846,444 - PP_2498 0.50 +0.6 2,846,444 - PP_2498 0.50 -0.5 2,846,444 - PP_2498 0.50 -0.9 2,846,464 + PP_2498 0.59 -0.5 2,846,465 - PP_2498 0.59 -0.8 2,846,465 - PP_2498 0.59 +1.6 2,846,474 + PP_2498 0.63 -0.5 2,846,475 - PP_2498 0.63 -0.4 2,846,563 + +0.5 2,846,563 + +1.6 2,846,618 + -1.1 2,846,618 + -1.2 2,846,700 - +0.4 2,846,915 - PP_2499 0.82 +2.1 2,846,915 - PP_2499 0.82 +1.7 2,846,944 - -2.0 2,847,096 - PP_2500 0.50 +1.0 2,847,096 - PP_2500 0.50 +0.6 2,847,173 - PP_2500 0.76 -0.6 2,847,179 - PP_2500 0.78 +2.5 2,847,179 - PP_2500 0.78 -0.4 2,847,202 + PP_2500 0.86 -2.7 2,847,203 - +0.0 2,847,347 - -0.3 2,847,347 - -0.4 2,847,399 + PP_2501 0.11 +1.1 2,847,411 + PP_2501 0.12 -0.9 2,847,412 - PP_2501 0.12 -0.7 2,847,412 - PP_2501 0.12 -1.7 2,847,412 - PP_2501 0.12 +0.8 2,847,588 - PP_2501 0.25 +0.0 2,847,588 - PP_2501 0.25 +0.6 2,847,716 + PP_2501 0.34 +2.1 2,847,717 - PP_2501 0.34 +0.8 2,847,717 - PP_2501 0.34 +2.5 2,847,717 - PP_2501 0.34 -0.8 2,847,901 + PP_2501 0.47 -0.4
Or see this region's nucleotide sequence