Strain Fitness in Pseudomonas putida KT2440 around PP_2410

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
2,752,685	+		PP_2409	0.20	-3.8
2,752,685	+		PP_2409	0.20	-0.7
2,752,685	+		PP_2409	0.20	+0.4
2,752,686	-		PP_2409	0.20	-0.4
2,752,686	-		PP_2409	0.20	+1.8
2,752,987	+		PP_2409	0.45	+1.6
2,753,305	+				-0.3
2,753,616	+				+2.6
2,753,803	+				+1.0
2,753,981	-				-1.0
2,754,147	-				-1.0
2,754,147	-		PP_2410	0.15	-1.8
2,754,254	+		PP_2410	0.18	-1.6
2,754,254	+		PP_2410	0.18	+1.3
2,754,255	-		PP_2410	0.18	+0.3
2,754,290	+		PP_2410	0.20	+0.6
2,754,291	-		PP_2410	0.20	+1.4
2,754,356	+		PP_2410	0.22	+0.5
2,754,356	+		PP_2410	0.22	+0.2
2,754,357	-		PP_2410	0.22	+2.0
2,754,357	-		PP_2410	0.22	+0.6
2,754,437	-		PP_2410	0.24	-1.0
2,754,646	-		PP_2410	0.31	-2.0
2,754,662	+		PP_2410	0.31	-0.4
2,754,663	-		PP_2410	0.31	-1.0
2,754,703	-		PP_2410	0.33	+1.8
2,754,813	+		PP_2410	0.36	-0.5
2,754,814	-		PP_2410	0.36	+0.8
2,754,814	-		PP_2410	0.36	+0.2
2,754,814	-		PP_2410	0.36	-0.1
2,754,814	-		PP_2410	0.36	-2.7
2,754,829	+		PP_2410	0.37	-1.1
2,754,829	+		PP_2410	0.37	+1.9
2,754,829	+		PP_2410	0.37	+1.0
2,755,034	+		PP_2410	0.43	+1.8
2,755,034	+		PP_2410	0.43	-0.7
2,755,035	-		PP_2410	0.43	+0.6
2,755,061	+		PP_2410	0.44	-0.7
2,755,061	+		PP_2410	0.44	+2.0
2,755,062	-		PP_2410	0.44	-2.0
2,755,111	+		PP_2410	0.46	+1.5
2,755,120	+		PP_2410	0.46	+0.0
2,755,234	+		PP_2410	0.50	-0.7
2,755,235	-		PP_2410	0.50	+3.0
2,755,250	+		PP_2410	0.50	+1.0
2,755,250	+		PP_2410	0.50	-0.3
2,755,559	+		PP_2410	0.60	-0.8
2,755,664	+		PP_2410	0.63	+3.7
2,755,664	+		PP_2410	0.63	-2.4
2,755,664	+		PP_2410	0.63	-2.0
2,755,664	+		PP_2410	0.63	+0.1
2,755,664	+		PP_2410	0.63	+2.5
2,755,665	-		PP_2410	0.63	+0.2
2,755,665	-		PP_2410	0.63	+0.9
2,755,665	-		PP_2410	0.63	+1.4
2,755,665	-		PP_2410	0.63	-0.8
2,755,964	+		PP_2410	0.73	+0.8
2,755,964	+		PP_2410	0.73	-2.1
2,755,965	-		PP_2410	0.73	+0.4
2,756,260	-		PP_2410	0.82	+0.8
2,756,270	+		PP_2410	0.82	+0.7
2,756,468	-		PP_2410	0.89	+3.4
2,756,479	+		PP_2410	0.89	-1.2
2,756,479	+		PP_2410	0.89	+0.9
2,756,479	+		PP_2410	0.89	+0.9
2,756,629	-				+1.2
2,756,629	-				+1.2
2,756,665	-				-1.2
2,756,746	+				+0.3
2,756,780	+				+1.7
2,756,780	+				+0.3
2,756,780	+				+0.6
2,756,780	+				-0.0
2,756,780	+				-0.3
2,756,780	+				+0.2
2,756,978	+				+0.9
2,756,979	-				-2.0
2,757,071	+		PP_2411	0.16	-0.8
2,757,099	+		PP_2411	0.18	+2.2
2,757,408	-		PP_2411	0.41	+0.9
2,757,422	+		PP_2411	0.42	-0.4
2,757,423	-		PP_2411	0.43	-1.5
2,757,423	-		PP_2411	0.43	-0.8
2,757,579	-		PP_2411	0.54	-0.6
2,757,773	+		PP_2411	0.69	-1.2
2,757,791	+		PP_2411	0.70	+0.0