Strain Fitness in Pseudomonas putida KT2440 around PP_1949

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
2,203,970	+		PP_1948	0.44	-0.5
2,204,294	+		PP_1948	0.66	-0.2
2,204,295	-		PP_1948	0.66	-1.1
2,204,378	-		PP_1948	0.71	-1.3
2,204,452	+		PP_1948	0.76	-1.3
2,204,452	+		PP_1948	0.76	+0.3
2,204,452	+		PP_1948	0.76	-0.2
2,204,452	+		PP_1948	0.76	+0.0
2,204,452	+		PP_1948	0.76	-0.1
2,204,452	+		PP_1948	0.76	-2.3
2,204,453	-		PP_1948	0.76	-1.7
2,204,453	-		PP_1948	0.76	-1.9
2,204,453	-		PP_1948	0.76	-1.2
2,204,453	-		PP_1948	0.76	-1.5
2,204,456	+		PP_1948	0.77	-0.2
2,204,456	+		PP_1948	0.77	+3.5
2,204,457	-		PP_1948	0.77	-0.5
2,204,457	-		PP_1948	0.77	-1.9
2,204,470	+		PP_1948	0.77	-1.8
2,204,477	-		PP_1948	0.78	-0.1
2,204,606	+		PP_1948	0.87	+0.1
2,204,607	-		PP_1948	0.87	-0.3
2,204,607	-		PP_1948	0.87	-2.1
2,204,669	-				+2.0
2,204,669	-				-0.1
2,204,669	-				+0.2
2,204,680	+				-0.0
2,204,680	+				+0.3
2,204,681	-				-0.6
2,204,767	+				-0.7
2,204,767	+				-1.1
2,204,768	-				+3.4
2,204,768	-				+0.0
2,204,768	-				-0.2
2,204,768	-				-0.6
2,204,768	-				+1.0
2,204,845	+				-0.0
2,204,846	-				+0.3
2,204,851	+				+0.3
2,204,851	+				-1.6
2,204,851	+				-1.9
2,204,851	+				-0.3
2,204,851	+				+0.8
2,204,852	-				+0.7
2,204,852	-				-0.4
2,204,852	-				-0.9
2,204,852	-				+1.8
2,204,855	+				-0.8
2,204,855	+				-0.7
2,204,855	+				+0.0
2,204,855	+				-0.1
2,204,855	+				+0.4
2,204,855	+				+1.9
2,204,855	+				-1.3
2,204,855	+				-0.2
2,204,855	+				-0.9
2,204,856	-				-1.1
2,204,856	-				+0.4
2,204,856	-				-0.0
2,204,856	-				-4.1
2,204,856	-				-0.9
2,204,856	-				-1.4
2,204,856	-				+1.3
2,204,927	+				-0.2
2,204,927	+				+0.9
2,204,928	-				-0.4
2,204,928	-				+0.8
2,205,022	+		PP_1949	0.12	-0.1
2,205,042	+		PP_1949	0.13	-1.5
2,205,043	-		PP_1949	0.13	-1.5
2,205,060	+		PP_1949	0.14	+0.0
2,205,060	+		PP_1949	0.14	+2.6
2,205,060	+		PP_1949	0.14	+3.7
2,205,060	+		PP_1949	0.14	-1.4
2,205,060	+		PP_1949	0.14	-0.4
2,205,060	+		PP_1949	0.14	-2.7
2,205,060	+				-1.5
2,205,060	+		PP_1949	0.14	-2.7
2,205,060	+		PP_1949	0.14	+0.3
2,205,061	-		PP_1949	0.14	+0.0
2,205,061	-		PP_1949	0.14	+0.1
2,205,061	-		PP_1949	0.14	+0.3
2,205,061	-				+0.0
2,205,061	-		PP_1949	0.14	-2.0
2,205,064	+		PP_1949	0.15	+2.5
2,205,064	+		PP_1949	0.15	+0.2
2,205,064	+		PP_1949	0.15	-1.0
2,205,064	+		PP_1949	0.15	+0.0
2,205,064	+		PP_1949	0.15	+1.8
2,205,064	+		PP_1949	0.15	-0.5
2,205,064	+		PP_1949	0.15	-0.1
2,205,065	-		PP_1949	0.15	-0.1
2,205,065	-		PP_1949	0.15	-0.6
2,205,065	-		PP_1949	0.15	+0.2
2,205,065	-		PP_1949	0.15	+3.1
2,205,065	-		PP_1949	0.15	-0.3
2,205,065	-		PP_1949	0.15	+0.4
2,205,065	-		PP_1949	0.15	-0.1
2,205,065	-		PP_1949	0.15	+0.0
2,205,065	-		PP_1949	0.15	-0.9
2,205,065	-		PP_1949	0.15	+0.2
2,205,065	-		PP_1949	0.15	+0.4
2,205,065	-		PP_1949	0.15	+1.6
2,205,065	-		PP_1949	0.15	-1.0
2,205,118	+		PP_1949	0.18	+0.4
2,205,118	+		PP_1949	0.18	+0.0
2,205,118	+		PP_1949	0.18	-0.4
2,205,119	-		PP_1949	0.18	+0.7
2,205,133	-		PP_1949	0.19	-0.3
2,205,133	-		PP_1949	0.19	+0.3
2,205,133	-		PP_1949	0.19	-5.1
2,205,133	-		PP_1949	0.19	+0.0
2,205,142	+		PP_1949	0.19	-1.8
2,205,143	-		PP_1949	0.19	+3.4
2,205,162	-		PP_1949	0.20	-4.9
2,205,162	-		PP_1949	0.20	-0.2
2,205,203	-		PP_1949	0.23	+0.0
2,205,399	+		PP_1949	0.35	-2.2
2,205,399	+		PP_1949	0.35	+0.9
2,205,399	+		PP_1949	0.35	-3.6
2,205,400	-		PP_1949	0.35	-0.7
2,205,400	-		PP_1949	0.35	-0.9
2,205,446	+		PP_1949	0.38	+0.2
2,205,533	-		PP_1949	0.43	-1.5
2,205,594	+		PP_1949	0.47	-2.4
2,205,595	-		PP_1949	0.47	+0.0
2,205,648	-		PP_1949	0.50	+0.9
2,205,648	-		PP_1949	0.50	+1.4
2,205,663	-		PP_1949	0.51	-1.6
2,205,715	+		PP_1949	0.54	-0.1
2,205,716	-		PP_1949	0.54	-2.1
2,205,716	-		PP_1949	0.54	+0.6
2,205,802	+		PP_1949	0.59	-1.7
2,205,802	+		PP_1949	0.59	+0.0
2,205,803	-		PP_1949	0.59	-0.3
2,205,803	-		PP_1949	0.59	-1.0
2,205,803	-		PP_1949	0.59	-0.8
2,205,990	-		PP_1949	0.71	-0.7
2,206,021	-		PP_1949	0.72	-0.8
2,206,143	-		PP_1949	0.80	-1.6
2,206,143	-		PP_1949	0.80	+0.3
2,206,205	-		PP_1949	0.84	+0.1
2,206,266	-		PP_1949	0.87	+0.0
2,206,266	-		PP_1949	0.87	+0.0
2,206,347	+				+0.7
2,206,347	+				-3.4
2,206,347	+				-0.6
2,206,369	-				+0.8
2,206,384	-				+1.6
2,206,481	+				-1.1
2,206,522	+				-1.5
2,206,666	-				+0.2
2,206,759	-		PP_1950	0.16	+0.0
2,206,804	-		PP_1950	0.20	-4.1
2,206,982	-		PP_1950	0.35	-2.0
2,207,058	-		PP_1950	0.41	-0.8
2,207,093	-		PP_1950	0.44	-0.3
2,207,123	+		PP_1950	0.47	-0.4
2,207,124	-		PP_1950	0.47	-0.3
2,207,167	-		PP_1950	0.51	-0.3
2,207,167	-		PP_1950	0.51	-0.2
2,207,192	-		PP_1950	0.53	-0.2
2,207,234	-		PP_1950	0.56	-0.1
2,207,234	-		PP_1950	0.56	-3.5
2,207,423	+		PP_1950	0.72	+1.8
2,207,423	+		PP_1950	0.72	-1.2
2,207,474	+		PP_1950	0.77	+0.3