Strain Fitness in Pseudomonas putida KT2440 around PP_1946

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
2,200,371	+				-3.4
2,200,417	+				-1.5
2,200,417	+				+0.1
2,200,417	+				+4.1
2,200,418	-				-1.5
2,200,418	-				+0.3
2,200,482	+				-2.8
2,200,483	-				-0.8
2,200,483	-				-0.2
2,200,483	-				-1.3
2,200,483	-				+1.4
2,200,574	+		PP_1945	0.17	-2.2
2,200,574	+		PP_1945	0.17	-2.8
2,200,575	-		PP_1945	0.17	+0.1
2,200,575	-		PP_1945	0.17	+0.2
2,200,632	+		PP_1945	0.23	+0.3
2,200,633	-		PP_1945	0.24	+2.1
2,200,701	+		PP_1945	0.31	-0.4
2,200,701	+		PP_1945	0.31	+0.6
2,200,701	+		PP_1945	0.31	-2.1
2,200,702	-		PP_1945	0.31	-0.6
2,200,702	-		PP_1945	0.31	+1.7
2,200,702	-		PP_1945	0.31	-3.1
2,200,702	-		PP_1945	0.31	+2.5
2,200,702	-		PP_1945	0.31	+0.1
2,200,785	+		PP_1945	0.41	+0.8
2,200,785	+		PP_1945	0.41	-0.8
2,200,785	+		PP_1945	0.41	-0.4
2,200,785	+		PP_1945	0.41	+2.9
2,200,785	+		PP_1945	0.41	+0.2
2,200,785	+		PP_1945	0.41	+1.2
2,200,786	-		PP_1945	0.41	+0.7
2,200,786	-		PP_1945	0.41	+0.1
2,200,786	-				+0.1
2,200,786	-		PP_1945	0.41	-0.4
2,200,786	-		PP_1945	0.41	+0.6
2,200,786	-		PP_1945	0.41	-0.5
2,200,795	+		PP_1945	0.42	-1.3
2,200,843	+				+0.1
2,200,843	+		PP_1945	0.47	-2.1
2,200,843	+		PP_1945	0.47	+0.3
2,200,844	-		PP_1945	0.48	-0.2
2,200,844	-		PP_1945	0.48	+0.0
2,200,844	-		PP_1945	0.48	-0.1
2,201,043	+		PP_1945	0.70	-0.5
2,201,043	+		PP_1945	0.70	-1.2
2,201,044	-		PP_1945	0.70	-1.1
2,201,044	-		PP_1945	0.70	-1.2
2,201,044	-		PP_1945	0.70	+0.6
2,201,044	-		PP_1945	0.70	+0.2
2,201,044	-		PP_1945	0.70	-0.4
2,201,087	+		PP_1945	0.75	-2.2
2,201,087	+		PP_1945	0.75	-0.0
2,201,087	+		PP_1945	0.75	-2.9
2,201,087	+		PP_1945	0.75	+0.5
2,201,088	-		PP_1945	0.75	+1.4
2,201,088	-		PP_1945	0.75	+0.4
2,201,088	-		PP_1945	0.75	-0.1
2,201,088	-		PP_1945	0.75	-0.1
2,201,088	-		PP_1945	0.75	-0.8
2,201,089	+		PP_1945	0.76	-0.7
2,201,090	-		PP_1945	0.76	+0.1
2,201,090	-		PP_1945	0.76	-0.4
2,201,118	+		PP_1945	0.79	+1.6
2,201,209	+		PP_1945	0.89	-0.3
2,201,210	-		PP_1945	0.89	-2.2
2,201,210	-		PP_1945	0.89	+0.1
2,201,210	-		PP_1945	0.89	+1.1
2,201,249	+				+0.1
2,201,249	+				-1.6
2,201,249	+				-0.6
2,201,249	+				-0.8
2,201,250	-				+0.3
2,201,250	-				-2.9
2,201,263	+				-0.4
2,201,263	+				+0.3
2,201,263	+				-1.7
2,201,296	+				+4.9
2,201,296	+				-1.8
2,201,296	+				-0.5
2,201,296	+				+1.1
2,201,296	+				+3.1
2,201,297	-				-0.4
2,201,334	+				+0.1
2,201,336	+				+3.1
2,201,354	+				+0.2
2,201,355	-				-0.5
2,201,355	-				+3.2
2,201,554	+		PP_1946	0.25	-0.8
2,201,555	-		PP_1946	0.25	-0.8
2,201,555	-		PP_1946	0.25	-0.1
2,201,652	-		PP_1946	0.38	-0.9
2,201,724	+		PP_1946	0.47	-2.9
2,201,724	+		PP_1946	0.47	+2.8
2,201,724	+		PP_1946	0.47	+2.4
2,201,725	-		PP_1946	0.47	+1.2
2,201,725	-		PP_1946	0.47	-2.8
2,201,725	-		PP_1946	0.47	+1.9
2,201,725	-		PP_1946	0.47	-0.6
2,201,725	-		PP_1946	0.47	+0.6
2,201,829	+		PP_1946	0.60	-3.5
2,201,851	+		PP_1946	0.63	+0.3
2,201,883	+		PP_1946	0.67	+0.8
2,201,883	+		PP_1946	0.67	+0.1
2,201,898	-		PP_1946	0.69	+0.9
2,201,906	+		PP_1946	0.70	-2.8
2,201,907	-		PP_1946	0.70	-1.5
2,202,063	+		PP_1946	0.90	-3.4
2,202,151	+				+1.9
2,202,270	-				-1.3
2,202,370	+				-0.9
2,202,396	+				-1.8
2,202,397	-				-1.0
2,202,398	+				-0.9
2,202,405	-				-0.1
2,202,584	+		PP_1947	0.26	+0.3
2,202,585	-		PP_1947	0.26	-1.5
2,202,585	-		PP_1947	0.26	+0.3
2,202,608	+		PP_1947	0.29	+2.4
2,202,609	-		PP_1947	0.29	+4.0
2,202,770	+		PP_1947	0.45	+1.6
2,202,770	+		PP_1947	0.45	-0.9
2,202,771	-		PP_1947	0.45	-0.3
2,202,804	-		PP_1947	0.48	+1.3
2,202,804	-		PP_1947	0.48	-0.7
2,202,804	-		PP_1947	0.48	+1.2
2,202,980	+		PP_1947	0.66	-0.4
2,202,984	-		PP_1947	0.67	-0.1
2,203,041	-		PP_1947	0.72	+1.4