Strain Fitness in Pseudomonas putida KT2440 around PP_1471

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
1,675,716	+				+0.1
1,675,716	+		PP_1470	0.68	+0.1
1,675,733	+				+0.1
1,675,742	+				+0.1
1,675,887	+		PP_1470	0.81	+0.1
1,675,890	+				+0.1
1,676,143	+				-1.2
1,677,606	-				-1.3
1,677,666	+				+3.0
1,677,666	+				-0.1
1,677,681	-				+2.1
1,677,681	-				+0.9
1,677,681	-				+1.1
1,677,706	-				+1.3
1,677,706	-				-1.9
1,677,750	+				-2.0
1,677,750	+				-2.9
1,677,750	+				-0.3
1,677,750	+				+1.1
1,677,751	-				-0.3
1,677,751	-				+0.8
1,677,751	-				+0.9
1,677,751	-				-1.7
1,677,751	-				-0.1
1,677,788	-		PP_5471	0.12	-0.3
1,677,788	-		PP_5471	0.12	+1.1
1,678,204	-				+0.1
1,678,208	+				+3.6
1,678,208	+				-0.8
1,678,208	+				-0.2
1,678,209	-				-0.5
1,678,209	-				+1.2
1,678,209	-				+1.4
1,678,315	-		PP_1473	0.28	-0.6
1,678,315	-		PP_1473	0.28	+0.3
1,678,351	-		PP_1473	0.40	-0.5
1,678,351	-		PP_1473	0.40	-3.5
1,678,351	-		PP_1473	0.40	+0.1
1,678,353	+		PP_1473	0.41	-0.2
1,678,443	-		PP_1473	0.73	-0.0
1,678,537	+				+0.1
1,678,537	+				+1.5
1,678,537	+				-3.7
1,678,538	-				-1.9