Strain Fitness in Pseudomonas putida KT2440 around PP_1289

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
1,474,481	+				+1.7
1,474,516	-				+1.8
1,474,616	+				-0.4
1,474,617	-				+2.3
1,474,637	+				+0.1
1,474,638	-				+2.0
1,474,638	-				+1.9
1,474,661	+				+1.1
1,474,661	+				+0.9
1,474,728	+				-0.2
1,474,785	-				-1.6
1,474,793	+				+3.8
1,474,793	+				-0.8
1,474,870	-				+0.7
1,475,082	+				-3.0
1,475,082	+				+0.4
1,475,082	+				-0.5
1,475,082	+				+0.5
1,475,082	+				-2.9
1,475,082	+				-1.9
1,475,082	+				-1.2
1,475,082	+				+0.5
1,475,082	+				-0.9
1,475,082	+				+0.4
1,475,082	+				-1.3
1,475,082	+				-2.2
1,475,082	+				-2.0
1,475,083	-				-0.2
1,475,083	-				-1.9
1,475,083	-				-1.1
1,475,083	-				+0.4
1,475,083	-				-0.9
1,475,083	-				+1.0
1,475,083	-				+1.2
1,475,085	+				+2.4
1,475,085	+				-3.0
1,475,085	+				+2.6
1,475,085	+				-0.5
1,475,085	+				+0.2
1,475,085	+				-0.0
1,475,086	-				+1.4
1,475,086	-				-1.2
1,475,086	-				-0.3
1,475,086	-				+0.2
1,475,086	-				+0.1
1,475,086	-				+1.7
1,475,086	-				-1.3
1,475,088	+				-0.1
1,475,181	+		PP_1289	0.21	-0.6
1,475,199	+		PP_1289	0.23	-2.1
1,475,278	-		PP_1289	0.33	+0.8
1,475,370	+		PP_1289	0.45	+4.2
1,475,371	-		PP_1289	0.45	-4.0
1,475,457	+		PP_1289	0.56	+0.4
1,475,457	+		PP_1289	0.56	-0.4
1,475,457	+		PP_1289	0.56	-2.5
1,475,457	+		PP_1289	0.56	-0.1
1,475,458	-		PP_1289	0.56	-1.7
1,475,458	-		PP_1289	0.56	+2.8
1,475,458	-		PP_1289	0.56	+1.7
1,475,459	+		PP_1289	0.56	-0.3
1,475,459	+		PP_1289	0.56	-3.0
1,475,459	+		PP_1289	0.56	-4.8
1,475,460	-		PP_1289	0.56	-1.9
1,475,460	-				-0.5
1,475,494	-		PP_1289	0.61	+4.4
1,475,538	+		PP_1289	0.66	-1.5
1,475,539	-		PP_1289	0.66	-0.0
1,475,539	-		PP_1289	0.66	-1.9
1,475,763	+				-0.3
1,475,764	-				+0.4
1,475,835	+				-2.6
1,475,835	+				-0.1
1,475,873	+				+0.8
1,475,874	-				-1.3
1,475,874	-				+0.1
1,475,902	+				+3.9
1,475,903	-				+1.4
1,475,903	-				+1.1
1,475,905	-				+1.4
1,475,905	-				-0.8
1,476,223	+		PP_1290	0.25	+3.1
1,476,337	+		PP_1290	0.35	+0.1
1,476,539	+				+0.1
1,476,540	-		PP_1290	0.53	+2.7
1,476,551	-		PP_1290	0.54	+0.3
1,476,551	-		PP_1290	0.54	+2.1
1,476,649	+		PP_1290	0.63	+0.5
1,476,650	-		PP_1290	0.63	-0.8
1,476,650	-		PP_1290	0.63	+1.3
1,476,758	+				+0.1
1,476,758	+		PP_1290	0.73	-1.1
1,476,759	-		PP_1290	0.73	+0.1
1,476,759	-		PP_1290	0.73	+0.0
1,476,769	+		PP_1290	0.74	-2.2
1,476,769	+		PP_1290	0.74	-0.8
1,476,770	-		PP_1290	0.74	+0.3
1,476,770	-		PP_1290	0.74	+0.1
1,476,770	-		PP_1290	0.74	-0.7
1,476,770	-		PP_1290	0.74	-0.4
1,476,770	-		PP_1290	0.74	-1.8
1,476,793	+		PP_1290	0.76	+1.2
1,476,793	+		PP_1290	0.76	+0.3
1,476,794	-		PP_1290	0.76	+0.8
1,476,794	-		PP_1290	0.76	-0.1