Strain Fitness in Pseudomonas putida KT2440 around PP_1278

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
1,458,782	+		PP_1277	0.44	-0.0
1,458,783	-		PP_1277	0.44	+1.9
1,458,783	-		PP_1277	0.44	-1.9
1,458,847	-		PP_1277	0.48	-0.1
1,458,899	+		PP_1277	0.52	+0.8
1,458,900	-		PP_1277	0.52	-4.1
1,458,900	-				-0.3
1,458,900	-		PP_1277	0.52	-1.4
1,458,936	-		PP_1277	0.55	-2.4
1,458,948	+		PP_1277	0.55	+0.7
1,458,948	+		PP_1277	0.55	+2.1
1,458,949	-		PP_1277	0.55	-0.6
1,459,009	+		PP_1277	0.60	-0.9
1,459,009	+		PP_1277	0.60	+0.1
1,459,009	+		PP_1277	0.60	+3.4
1,459,010	-		PP_1277	0.60	-0.2
1,459,010	-		PP_1277	0.60	-0.5
1,459,010	-		PP_1277	0.60	-0.5
1,459,027	-		PP_1277	0.61	+0.7
1,459,027	-		PP_1277	0.61	-3.8
1,459,137	+		PP_1277	0.68	-3.0
1,459,429	+		PP_1277	0.88	+2.0
1,459,429	+		PP_1277	0.88	-0.3
1,459,430	-		PP_1277	0.88	-1.8
1,459,495	+				+0.0
1,459,495	+				-2.2
1,459,495	+				+0.0
1,459,496	-				+0.8
1,459,496	-				+1.2
1,459,496	-				-0.1
1,459,583	+				-1.9
1,459,608	+				-2.1
1,459,608	+				-0.8
1,459,609	-				-0.5
1,459,609	-				-2.8
1,459,638	+				+0.3
1,459,690	+				-0.9
1,459,691	-				-1.4
1,459,694	+				-0.1
1,459,694	+				-0.1
1,459,763	+		PP_1278	0.21	+4.9
1,459,764	-		PP_1278	0.21	+0.5
1,459,764	-		PP_1278	0.21	+1.1
1,459,764	-		PP_1278	0.21	-2.7
1,459,976	+		PP_1278	0.53	+0.9
1,459,976	+		PP_1278	0.53	+0.7
1,459,976	+		PP_1278	0.53	-0.5
1,459,977	-		PP_1278	0.54	-2.1
1,459,979	+		PP_1278	0.54	+1.6
1,459,979	+		PP_1278	0.54	+1.7
1,459,980	-		PP_1278	0.54	+0.7
1,459,980	-		PP_1278	0.54	+1.1
1,460,033	+		PP_1278	0.62	+0.8
1,460,033	+		PP_1278	0.62	-0.7
1,460,034	-		PP_1278	0.62	-0.9
1,460,138	+		PP_1278	0.78	+1.1
1,460,138	+		PP_1278	0.78	+1.1
1,460,139	-		PP_1278	0.79	-0.8
1,460,146	+		PP_1278	0.80	-1.6
1,460,147	-		PP_1278	0.80	-0.2
1,460,147	-		PP_1278	0.80	+1.5
1,460,180	+		PP_1278	0.85	-0.2
1,460,181	-		PP_1278	0.85	+1.4
1,460,181	-		PP_1278	0.85	+2.1
1,460,292	+				+0.1
1,460,292	+				-0.1
1,460,414	-				+1.1
1,460,479	+		PP_1279	0.16	+1.6
1,460,521	+		PP_1279	0.19	-1.6
1,460,522	-		PP_1279	0.19	-0.9
1,460,590	+		PP_1279	0.25	+1.3
1,460,591	-		PP_1279	0.25	+2.7
1,460,591	-		PP_1279	0.25	-1.5
1,460,762	-		PP_1279	0.40	-1.1
1,460,762	-		PP_1279	0.40	-2.5
1,460,762	-		PP_1279	0.40	+0.0
1,460,762	-		PP_1279	0.40	+2.1
1,460,871	-		PP_1279	0.49	-1.0
1,460,992	+		PP_1279	0.59	-2.0
1,460,992	+		PP_1279	0.59	-0.4
1,460,993	-		PP_1279	0.60	+0.8
1,460,993	-		PP_1279	0.60	+1.2
1,461,035	-		PP_1279	0.63	+0.4
1,461,043	+		PP_1279	0.64	+0.1
1,461,086	+		PP_1279	0.68	+2.3
1,461,210	+		PP_1279	0.78	+0.5