Strain Fitness in Pseudomonas putida KT2440 around PP_1194

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
1,367,368	+				-2.0
1,367,369	-				+0.5
1,367,372	-				-2.6
1,367,404	+				+0.6
1,367,426	+				-0.9
1,367,471	+				+0.5
1,367,518	+				+0.9
1,367,518	+				+1.8
1,367,519	-				-1.4
1,367,584	-				+1.5
1,368,008	+		PP_1193	0.73	+1.8
1,368,009	-		PP_1193	0.73	-0.4
1,368,009	-		PP_1193	0.73	+1.3
1,368,009	-		PP_1193	0.73	-0.3
1,368,023	+		PP_1193	0.75	-0.7
1,368,024	-		PP_1193	0.75	-1.9
1,368,186	+				-0.4
1,368,212	-				-2.7
1,368,240	+				-1.4
1,368,240	+				-0.6
1,368,240	+				-0.2
1,368,241	-				-1.0
1,368,241	-				+1.1
1,368,241	-				+1.1
1,368,241	-				-0.1
1,368,293	+				-0.7
1,368,330	+				+0.5
1,368,331	-				-1.6
1,368,452	+		PP_1194	0.11	-0.9
1,368,453	-		PP_1194	0.12	-0.6
1,368,456	+		PP_1194	0.12	+1.7
1,368,456	+		PP_1194	0.12	+0.2
1,368,456	+		PP_1194	0.12	+0.5
1,368,456	+		PP_1194	0.12	-0.1
1,368,457	-		PP_1194	0.12	+1.0
1,368,457	-		PP_1194	0.12	-0.1
1,368,560	+		PP_1194	0.24	+0.1
1,368,560	+		PP_1194	0.24	-1.4
1,368,561	-		PP_1194	0.24	-2.9
1,368,568	+		PP_1194	0.25	-2.2
1,368,569	-		PP_1194	0.25	-1.0
1,368,569	-		PP_1194	0.25	-4.1
1,368,569	-		PP_1194	0.25	-3.7
1,368,576	-		PP_1194	0.26	-1.5
1,368,597	-		PP_1194	0.28	-0.7
1,368,632	+		PP_1194	0.33	+0.7
1,368,643	+		PP_1194	0.34	+0.7
1,368,644	-		PP_1194	0.34	-2.1
1,368,664	+		PP_1194	0.36	+0.3
1,368,664	+		PP_1194	0.36	-2.9
1,368,665	-		PP_1194	0.36	-2.0
1,368,665	-		PP_1194	0.36	+0.9
1,368,910	-		PP_1194	0.65	-0.4
1,368,989	+		PP_1194	0.74	-1.7
1,368,990	-		PP_1194	0.74	+0.1
1,368,999	+		PP_1194	0.75	+0.6
1,368,999	+		PP_1194	0.75	-0.5
1,368,999	+		PP_1194	0.75	-2.4
1,368,999	+		PP_1194	0.75	+0.6
1,369,000	-		PP_1194	0.76	-1.2
1,369,000	-		PP_1194	0.76	-0.9
1,369,000	-		PP_1194	0.76	-2.7
1,369,000	-		PP_1194	0.76	-0.2
1,369,000	-		PP_1194	0.76	-2.2
1,369,000	-		PP_1194	0.76	-1.3
1,369,045	+		PP_1194	0.81	-0.6
1,369,069	+		PP_1194	0.84	-2.5
1,369,070	-		PP_1194	0.84	+2.1
1,369,070	-		PP_1194	0.84	-0.9
1,369,070	-		PP_1194	0.84	+3.3
1,369,070	-		PP_1194	0.84	+0.1
1,369,155	+				-0.6
1,369,155	+				-0.6
1,369,155	+				-0.4
1,369,161	+				-1.0
1,369,172	+				-0.9
1,369,223	+				-0.4
1,369,223	+				-0.6
1,369,224	-				-2.4
1,369,361	-				-4.2
1,369,439	-		PP_1195	0.14	+0.1
1,369,481	+		PP_1195	0.16	+0.7
1,369,481	+		PP_1195	0.16	+0.1
1,369,481	+		PP_1195	0.16	+2.1
1,369,481	+		PP_1195	0.16	+0.1
1,369,482	-		PP_1195	0.16	+1.0
1,369,482	-		PP_1195	0.16	-0.9
1,369,482	-		PP_1195	0.16	+0.5
1,369,506	+		PP_1195	0.18	-2.4
1,369,506	+		PP_1195	0.18	+0.1
1,369,506	+				+0.1
1,369,506	+		PP_1195	0.18	-1.9
1,369,506	+		PP_1195	0.18	+0.1
1,369,506	+		PP_1195	0.18	-0.8
1,369,506	+		PP_1195	0.18	-4.4
1,369,506	+		PP_1195	0.18	+1.5
1,369,506	+		PP_1195	0.18	-2.2
1,369,507	-		PP_1195	0.18	-0.2
1,369,507	-		PP_1195	0.18	-1.9
1,369,507	-		PP_1195	0.18	+1.4
1,369,507	-		PP_1195	0.18	-0.4
1,369,507	-		PP_1195	0.18	-0.6
1,369,507	-		PP_1195	0.18	+1.6
1,369,543	+		PP_1195	0.20	-1.2
1,369,552	+		PP_1195	0.20	-1.3
1,369,553	-		PP_1195	0.20	-0.3
1,369,567	+		PP_1195	0.21	-0.4
1,369,617	-		PP_1195	0.24	+0.9
1,369,629	+		PP_1195	0.25	-2.0
1,369,629	+		PP_1195	0.25	+0.1
1,369,630	-		PP_1195	0.25	+0.7
1,369,843	-		PP_1195	0.37	-0.7
1,370,143	-		PP_1195	0.55	+0.1
1,370,149	+		PP_1195	0.55	+0.9
1,370,149	+		PP_1195	0.55	-0.6
1,370,149	+		PP_1195	0.55	+3.7
1,370,149	+		PP_1195	0.55	-0.7
1,370,150	-		PP_1195	0.55	-1.9
1,370,208	+		PP_1195	0.58	+2.7
1,370,208	+		PP_1195	0.58	-1.1