Strain Fitness in Pseudomonas putida KT2440 around PP_1020

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
1,162,854	+		PP_1019	0.46	+2.7
1,162,854	+		PP_1019	0.46	-0.2
1,162,855	-		PP_1019	0.46	-0.7
1,162,855	-		PP_1019	0.46	-0.7
1,162,855	-		PP_1019	0.46	+0.2
1,162,855	-		PP_1019	0.46	-2.8
1,162,880	-		PP_1019	0.48	-1.6
1,162,880	-		PP_1019	0.48	+2.5
1,162,952	+		PP_1019	0.53	+0.2
1,162,952	+		PP_1019	0.53	+0.7
1,163,034	+		PP_1019	0.60	+0.2
1,163,034	+		PP_1019	0.60	-0.1
1,163,034	+		PP_1019	0.60	-1.1
1,163,034	+		PP_1019	0.60	-1.8
1,163,035	-		PP_1019	0.60	-2.4
1,163,035	-		PP_1019	0.60	-2.8
1,163,035	-		PP_1019	0.60	-2.2
1,163,037	+				-1.4
1,163,037	+		PP_1019	0.60	+0.4
1,163,037	+		PP_1019	0.60	+0.6
1,163,037	+		PP_1019	0.60	+1.2
1,163,038	-		PP_1019	0.60	+3.7
1,163,064	+		PP_1019	0.62	+0.2
1,163,065	-		PP_1019	0.62	-1.7
1,163,250	+		PP_1019	0.76	-3.3
1,163,251	-		PP_1019	0.76	-1.1
1,163,271	+		PP_1019	0.77	+0.2
1,163,271	+		PP_1019	0.77	-1.3
1,163,327	+		PP_1019	0.81	+1.1
1,163,426	+		PP_1019	0.89	+2.2
1,163,427	-		PP_1019	0.89	-1.2
1,163,433	+		PP_1019	0.89	+3.0
1,163,434	-		PP_1019	0.89	-0.6
1,163,448	+				+0.6
1,163,448	+				-2.0
1,163,448	+				+1.2
1,163,448	+				-0.9
1,163,448	+				+1.2
1,163,448	+				+0.2
1,163,449	-				+0.9
1,163,499	+				-1.5
1,163,500	-				-0.5
1,163,500	-				-0.2
1,163,941	-		PP_1020	0.29	+0.3
1,164,307	-		PP_1020	0.72	-3.1
1,164,307	-		PP_1020	0.72	-0.9
1,164,655	+		PP_1021	0.13	-2.1
1,164,656	-		PP_1021	0.13	+0.1
1,164,656	-		PP_1021	0.13	-1.7
1,164,701	+		PP_1021	0.19	-0.4
1,164,701	+		PP_1021	0.19	+0.9
1,164,702	-		PP_1021	0.19	+2.5
1,164,702	-		PP_1021	0.19	-0.5
1,164,702	-		PP_1021	0.19	-0.8
1,165,148	-		PP_1021	0.70	+1.0
1,165,163	+		PP_1021	0.72	-1.3
1,165,163	+		PP_1021	0.72	-1.4
1,165,479	-				-3.3
1,165,503	+				+2.1
1,165,529	+				-1.0