Strain Fitness in Pseudomonas putida KT2440 around PP_1019

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
1,161,303	-		PP_1018	0.23	+1.2
1,161,303	-		PP_1018	0.23	-4.5
1,161,506	+		PP_1018	0.41	-5.0
1,161,506	+		PP_1018	0.41	+0.2
1,161,609	-		PP_1018	0.49	-0.8
1,161,609	-		PP_1018	0.49	-1.8
1,161,707	+		PP_1018	0.58	-4.4
1,161,707	+		PP_1018	0.58	-0.4
1,161,707	+		PP_1018	0.58	-5.2
1,161,707	+		PP_1018	0.58	-4.1
1,161,708	-		PP_1018	0.58	+0.2
1,161,708	-		PP_1018	0.58	-3.6
1,161,708	-		PP_1018	0.58	-2.4
1,161,708	-		PP_1018	0.58	-4.4
1,162,199	+				-2.0
1,162,199	+				+0.2
1,162,200	-				-1.8
1,162,200	-				+2.5
1,162,210	+				-0.6
1,162,211	-				+0.5
1,162,211	-				-2.4
1,162,288	+				-1.2
1,162,288	+				+0.2
1,162,288	+				-2.2
1,162,288	+				+0.2
1,162,289	-				+0.2
1,162,389	+		PP_1019	0.12	+3.0
1,162,407	+		PP_1019	0.13	+0.5
1,162,407	+		PP_1019	0.13	+0.6
1,162,407	+		PP_1019	0.13	-3.0
1,162,408	-		PP_1019	0.13	+0.2
1,162,443	+		PP_1019	0.16	-0.1
1,162,467	+				-0.8
1,162,467	+		PP_1019	0.17	+2.2
1,162,468	-		PP_1019	0.17	+1.6
1,162,513	+		PP_1019	0.21	-1.8
1,162,514	-		PP_1019	0.21	-1.6
1,162,684	-		PP_1019	0.34	+0.2
1,162,854	+		PP_1019	0.46	+2.7
1,162,854	+		PP_1019	0.46	-0.2
1,162,855	-		PP_1019	0.46	-0.7
1,162,855	-		PP_1019	0.46	-0.7
1,162,855	-		PP_1019	0.46	+0.2
1,162,855	-		PP_1019	0.46	-2.8
1,162,880	-		PP_1019	0.48	-1.6
1,162,880	-		PP_1019	0.48	+2.5
1,162,952	+		PP_1019	0.53	+0.2
1,162,952	+		PP_1019	0.53	+0.7
1,163,034	+		PP_1019	0.60	+0.2
1,163,034	+		PP_1019	0.60	-0.1
1,163,034	+		PP_1019	0.60	-1.1
1,163,034	+		PP_1019	0.60	-1.8
1,163,035	-		PP_1019	0.60	-2.4
1,163,035	-		PP_1019	0.60	-2.8
1,163,035	-		PP_1019	0.60	-2.2
1,163,037	+				-1.4
1,163,037	+		PP_1019	0.60	+0.4
1,163,037	+		PP_1019	0.60	+0.6
1,163,037	+		PP_1019	0.60	+1.2
1,163,038	-		PP_1019	0.60	+3.7
1,163,064	+		PP_1019	0.62	+0.2
1,163,065	-		PP_1019	0.62	-1.7
1,163,250	+		PP_1019	0.76	-3.3
1,163,251	-		PP_1019	0.76	-1.1
1,163,271	+		PP_1019	0.77	+0.2
1,163,271	+		PP_1019	0.77	-1.3
1,163,327	+		PP_1019	0.81	+1.1
1,163,426	+		PP_1019	0.89	+2.2
1,163,427	-		PP_1019	0.89	-1.2
1,163,433	+		PP_1019	0.89	+3.0
1,163,434	-		PP_1019	0.89	-0.6
1,163,448	+				+0.6
1,163,448	+				-2.0
1,163,448	+				+1.2
1,163,448	+				-0.9
1,163,448	+				+1.2
1,163,448	+				+0.2
1,163,449	-				+0.9
1,163,499	+				-1.5
1,163,500	-				-0.5
1,163,500	-				-0.2
1,163,941	-		PP_1020	0.29	+0.3
1,164,307	-		PP_1020	0.72	-3.1
1,164,307	-		PP_1020	0.72	-0.9